A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.3
nTPM
Monaco:
293.3
nTPM
Schmiedel:
156.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.3
HPA sample
nTPM
Classical monocyte nTPM: 31.3
Samples: 6
Max nTPM: 66.4
Min nTPM: 13.3
P10809_1003
66.4
P10809_1020
26.1
P10809_1039
13.3
P10809_1058
22.9
P10809_1080
28.7
P10809_1107
30.6
Intermediate monocyte nTPM: 33.1
Samples: 6
Max nTPM: 51.8
Min nTPM: 21.9
P10809_1004
51.8
P10809_1023
21.9
P10809_1042
25.2
P10809_1061
43.1
P10809_1081
26.3
P10809_1108
30.1
Non-classical monocyte nTPM: 42.3
Samples: 5
Max nTPM: 71.8
Min nTPM: 25.7
P10809_1005
60.1
P10809_1053
25.7
P10809_1072
71.8
P10809_1082
27.0
P10809_1109
27.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
293.3
Monaco sample
nTPM
Classical monocyte nTPM: 272.8
Samples: 4
Max nTPM: 328.5
Min nTPM: 241.4
RHH5313_R3680
257.7
RHH5221_R3593
263.4
RHH5250_R3622
328.5
RHH5279_R3651
241.4
Intermediate monocyte nTPM: 287.3
Samples: 4
Max nTPM: 354.2
Min nTPM: 252.1
RHH5314_R3681
252.1
RHH5222_R3594
354.2
RHH5251_R3623
265.9
RHH5280_R3652
277.0
Non-classical monocyte nTPM: 293.3
Samples: 4
Max nTPM: 333.9
Min nTPM: 265.4
RHH5315_R3682
265.4
RHH5223_R3595
333.9
RHH5252_R3624
303.9
RHH5281_R3653
270.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
156.8
Schmiedel sample id
TPM
Classical monocyte TPM: 120.6
Samples: 91
Max TPM: 150.3
Min TPM: 90.0
MONOCYTES_1
150.3
MONOCYTES_2
150.2
MONOCYTES_3
145.9
MONOCYTES_4
145.5
MONOCYTES_5
143.2
MONOCYTES_6
142.5
MONOCYTES_7
141.4
MONOCYTES_8
140.9
MONOCYTES_9
138.9
MONOCYTES_10
138.4
MONOCYTES_11
136.2
MONOCYTES_12
135.2
MONOCYTES_13
133.8
MONOCYTES_14
133.5
MONOCYTES_15
132.9
MONOCYTES_16
132.7
MONOCYTES_17
132.0
MONOCYTES_18
131.9
MONOCYTES_19
130.8
MONOCYTES_20
129.5
MONOCYTES_21
129.4
MONOCYTES_22
129.3
MONOCYTES_23
129.2
MONOCYTES_24
129.0
MONOCYTES_25
128.9
MONOCYTES_26
128.7
MONOCYTES_27
128.4
MONOCYTES_28
128.2
MONOCYTES_29
128.2
MONOCYTES_30
127.2
MONOCYTES_31
127.2
MONOCYTES_32
127.1
MONOCYTES_33
126.7
MONOCYTES_34
124.5
MONOCYTES_35
124.5
MONOCYTES_36
124.5
MONOCYTES_37
124.0
MONOCYTES_38
123.5
MONOCYTES_39
123.1
MONOCYTES_40
123.0
MONOCYTES_41
123.0
MONOCYTES_42
122.7
MONOCYTES_43
122.3
MONOCYTES_44
121.6
MONOCYTES_45
121.1
MONOCYTES_46
121.1
MONOCYTES_47
120.8
MONOCYTES_48
120.8
MONOCYTES_49
120.6
MONOCYTES_50
120.5
MONOCYTES_51
120.4
MONOCYTES_52
120.3
MONOCYTES_53
119.8
MONOCYTES_54
119.1
MONOCYTES_55
118.5
MONOCYTES_56
118.1
MONOCYTES_57
117.4
MONOCYTES_58
117.3
MONOCYTES_59
117.1
MONOCYTES_60
115.4
MONOCYTES_61
114.8
MONOCYTES_62
114.2
MONOCYTES_63
114.2
MONOCYTES_64
113.4
MONOCYTES_65
113.0
MONOCYTES_66
112.2
MONOCYTES_67
112.1
MONOCYTES_68
111.7
MONOCYTES_69
111.2
MONOCYTES_70
110.6
MONOCYTES_71
109.9
MONOCYTES_72
109.7
MONOCYTES_73
109.3
MONOCYTES_74
109.3
MONOCYTES_75
108.2
MONOCYTES_76
107.8
MONOCYTES_77
106.7
MONOCYTES_78
106.3
MONOCYTES_79
106.3
MONOCYTES_80
106.1
MONOCYTES_81
105.9
MONOCYTES_82
102.9
MONOCYTES_83
99.9
MONOCYTES_84
98.4
MONOCYTES_85
98.1
MONOCYTES_86
98.1
MONOCYTES_87
97.2
MONOCYTES_88
96.7
MONOCYTES_89
93.4
MONOCYTES_90
90.7
MONOCYTES_91
90.0
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Non-classical monocyte TPM: 156.8
Samples: 90
Max TPM: 196.8
Min TPM: 93.7
M2_1
196.8
M2_2
192.1
M2_3
191.0
M2_4
189.6
M2_5
188.8
M2_6
186.9
M2_7
186.2
M2_8
184.7
M2_9
183.5
M2_10
182.4
M2_11
182.4
M2_12
182.4
M2_13
180.6
M2_14
180.2
M2_15
178.2
M2_16
176.7
M2_17
174.5
M2_18
173.4
M2_19
173.1
M2_20
172.7
M2_21
172.7
M2_22
172.6
M2_23
171.8
M2_24
170.1
M2_25
169.4
M2_26
168.7
M2_27
168.5
M2_28
167.5
M2_29
165.6
M2_30
165.2
M2_31
163.9
M2_32
162.8
M2_33
162.6
M2_34
162.3
M2_35
161.9
M2_36
161.2
M2_37
160.9
M2_38
160.4
M2_39
160.3
M2_40
159.5
M2_41
159.4
M2_42
159.4
M2_43
159.2
M2_44
159.2
M2_45
158.4
M2_46
158.1
M2_47
157.9
M2_48
157.8
M2_49
157.6
M2_50
156.9
M2_51
155.9
M2_52
155.8
M2_53
154.8
M2_54
154.6
M2_55
153.9
M2_56
153.7
M2_57
153.6
M2_58
151.8
M2_59
151.6
M2_60
151.0
M2_61
150.6
M2_62
150.6
M2_63
150.1
M2_64
149.7
M2_65
149.6
M2_66
149.4
M2_67
148.7
M2_68
148.0
M2_69
147.6
M2_70
146.4
M2_71
143.4
M2_72
142.2
M2_73
141.9
M2_74
139.8
M2_75
137.9
M2_76
135.5
M2_77
132.9
M2_78
132.9
M2_79
132.8
M2_80
130.4
M2_81
129.9
M2_82
127.2
M2_83
126.3
M2_84
122.0
M2_85
121.1
M2_86
114.0
M2_87
114.0
M2_88
110.9
M2_89
107.8
M2_90
93.7
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