MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.1 nTPM
HPA Brain:49.5 nTPM
GTEx:47.1 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Pig:56.6 nTPM
Mouse:24.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
2828 Female, age 72, unknown 38.9
2586 Male, age 75, left hemisphere 29.7
1827 Male, age 72, unknown 25.2
1870 Female, age 42, unknown 24.7
2411 Female, age 72, unknown 23.6
2666 Male, age 74, left hemisphere 20.0
1833 Male, age 53, unknown 18.1
1830 Male, age 51, unknown 17.1
2019 Male, age 18, unknown 15.5
2219 Male, age 76, both hemispheres 13.7
Dorsal raphe nucleus
nTPM: 49.5
1828 Male, age 53, unknown 61.6
2298 Female, age 72, unknown 60.7
2047 Male, age 72, unknown 57.0
2016 Female, age 72, unknown 43.9
2750 Male, age 76, both hemispheres 24.6
Inferior colliculus
nTPM: 42.8
2097 Female, age 72, unknown 63.2
1890 Male, age 53, unknown 51.0
1848 Female, age 42, unknown 32.7
2849 Male, age 72, unknown 24.4
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Periaquaductal grey, anterior
nTPM: 29.8
1795 Male, age 51, unknown 35.1
2502 Female, age 75, unknown 31.7
1947 Male, age 18, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 32.8
2850 Male, age 76, both hemispheres 38.4
1840 Male, age 53, unknown 32.9
1831 Male, age 72, unknown 30.4
2464 Female, age 72, unknown 29.6
Periaquaductal grey, lateral
nTPM: 39.2
2053 Male, age 18, unknown 43.2
2140 Male, age 76, both hemispheres 38.4
2272 Male, age 74, both hemispheres 35.9
Pretectal area
nTPM: 30.8
2273 Male, age 74, both hemispheres 48.8
2224 Female, age 72, unknown 41.2
1816 Male, age 51, unknown 37.1
2667 Female, age 75, unknown 34.9
2316 Male, age 76, right hemisphere 32.8
2825 Male, age 18, unknown 29.5
1944 Female, age 72, unknown 29.2
2407 Male, age 75, both hemispheres 25.7
1815 Male, age 53, unknown 21.5
1817 Female, age 42, unknown 19.7
2007 Male, age 72, unknown 18.5
Red nucleus
nTPM: 20.8
2503 Female, age 72, unknown 28.6
2769 Male, age 72, unknown 25.8
2227 Male, age 72, unknown 25.6
2725 Female, age 75, unknown 25.4
2584 Male, age 75, left hemisphere 20.2
1821 Female, age 72, unknown 20.1
1904 Male, age 53, unknown 18.7
2823 Male, age 76, right hemisphere 18.4
1954 Female, age 42, unknown 18.3
2785 Male, age 18, unknown 18.0
1865 Male, age 51, unknown 16.0
2588 Male, age 74, left hemisphere 13.9
Substantia nigra
nTPM: 31.9
2699 Male, age 18, unknown 49.3
1916 Female, age 42, unknown 39.3
1851 Male, age 51, unknown 35.3
2590 Female, age 75, unknown 30.2
2241 Male, age 72, unknown 30.0
2665 Male, age 74, both hemispheres 29.5
1941 Male, age 53, unknown 27.2
2409 Female, age 72, unknown 27.1
2583 Male, age 75, right hemisphere 26.6
1889 Female, age 72, unknown 24.8
Superior colliculus
nTPM: 29.5
1995 Male, age 72, unknown 37.5
1913 Female, age 42, unknown 36.0
2261 Male, age 18, unknown 33.2
2087 Female, age 72, unknown 32.6
2664 Male, age 75, both hemispheres 31.0
2587 Male, age 74, left hemisphere 30.6
1796 Male, age 53, unknown 30.4
1839 Male, age 51, unknown 26.6
2668 Female, age 75, unknown 18.7
1895 Male, age 76, right hemisphere 18.2
Ventral tegmental area
nTPM: 34.1
1915 Female, age 42, unknown 44.0
2021 Male, age 53, unknown 38.6
1942 Male, age 51, unknown 34.1
2218 Male, age 76, both hemispheres 29.6
2223 Female, age 72, unknown 29.2
2410 Female, age 72, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 47.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.1
Samples: 139

Max nTPM: 138.9
Min nTPM: 2.8
Std nTPM: 25.1
Median nTPM: 42.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 138.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 134.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 117.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 109.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 106.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 106.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 100.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 94.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 88.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 84.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 83.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.0
FF:10158-103A5 76 years, female 58.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 56.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.6
Samples: 4

Max nTPM: 99.1
Min nTPM: 25.3
Sample A Female 99.1
Sample B Female 34.7
Sample C Male 67.4
Sample D Male 25.3
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 53.4
Min nTPM: 31.9
Sample A Female 33.6
Sample B Female 31.9
Sample C Male 53.4
Sample D Male 50.8
Periaqueductal gray
nTPM: 34.3
Samples: 3

Max nTPM: 44.2
Min nTPM: 27.7
Sample B Female 31.0
Sample C Male 44.2
Sample D Male 27.7
Superior colliculi
nTPM: 43.5
Samples: 4

Max nTPM: 57.8
Min nTPM: 30.2
Sample A Female 48.2
Sample B Female 30.2
Sample C Male 57.8
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 27.4
Min nTPM: 22.5
Sample A Male 27.4
Sample B Male 22.5
Sample C Female 25.8
Sample D Female 23.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
75650863 Antisense, RP_060518_02_E04, Mouse strain C57BL/6J (56 days, male) 0.7
68341358 Antisense, RP_041207_01_D09, Mouse strain C57BL/6J (56 days, male) 0.6
70813929 Antisense, RP_050725_02_F07, Mouse strain C57BL/6J (56 days, male) 0.5

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