A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
571.2
nTPM
Monaco:
961.0
nTPM
Schmiedel:
244.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
571.2
HPA sample
nTPM
Classical monocyte nTPM: 293.2
Samples: 6
Max nTPM: 378.4
Min nTPM: 219.3
P10809_1003
378.4
P10809_1020
354.5
P10809_1039
317.6
P10809_1058
219.3
P10809_1080
255.0
P10809_1107
234.4
Intermediate monocyte nTPM: 479.3
Samples: 6
Max nTPM: 598.8
Min nTPM: 368.3
P10809_1004
435.1
P10809_1023
598.8
P10809_1042
579.5
P10809_1061
492.8
P10809_1081
368.3
P10809_1108
401.4
Non-classical monocyte nTPM: 571.2
Samples: 5
Max nTPM: 710.8
Min nTPM: 459.1
P10809_1005
469.5
P10809_1053
710.8
P10809_1072
692.3
P10809_1082
459.1
P10809_1109
524.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
961.0
Monaco sample
nTPM
Classical monocyte nTPM: 586.0
Samples: 4
Max nTPM: 609.9
Min nTPM: 568.5
RHH5313_R3680
568.5
RHH5221_R3593
590.4
RHH5250_R3622
609.9
RHH5279_R3651
575.1
Intermediate monocyte nTPM: 824.3
Samples: 4
Max nTPM: 917.8
Min nTPM: 747.7
RHH5314_R3681
747.7
RHH5222_R3594
917.8
RHH5251_R3623
876.0
RHH5280_R3652
755.5
Non-classical monocyte nTPM: 961.0
Samples: 4
Max nTPM: 1007.6
Min nTPM: 902.9
RHH5315_R3682
955.8
RHH5223_R3595
1007.6
RHH5252_R3624
977.7
RHH5281_R3653
902.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
244.2
Schmiedel sample id
TPM
Classical monocyte TPM: 131.8
Samples: 91
Max TPM: 162.7
Min TPM: 95.7
MONOCYTES_1
162.7
MONOCYTES_2
161.4
MONOCYTES_3
158.5
MONOCYTES_4
157.3
MONOCYTES_5
157.0
MONOCYTES_6
156.2
MONOCYTES_7
154.2
MONOCYTES_8
149.7
MONOCYTES_9
148.7
MONOCYTES_10
147.8
MONOCYTES_11
147.1
MONOCYTES_12
146.9
MONOCYTES_13
146.9
MONOCYTES_14
146.4
MONOCYTES_15
146.1
MONOCYTES_16
145.6
MONOCYTES_17
145.6
MONOCYTES_18
144.6
MONOCYTES_19
144.4
MONOCYTES_20
142.7
MONOCYTES_21
142.4
MONOCYTES_22
142.4
MONOCYTES_23
142.0
MONOCYTES_24
141.2
MONOCYTES_25
141.1
MONOCYTES_26
140.4
MONOCYTES_27
140.4
MONOCYTES_28
139.5
MONOCYTES_29
139.3
MONOCYTES_30
139.1
MONOCYTES_31
139.0
MONOCYTES_32
138.5
MONOCYTES_33
137.6
MONOCYTES_34
137.6
MONOCYTES_35
137.1
MONOCYTES_36
137.1
MONOCYTES_37
137.0
MONOCYTES_38
136.5
MONOCYTES_39
135.7
MONOCYTES_40
133.6
MONOCYTES_41
133.0
MONOCYTES_42
132.6
MONOCYTES_43
132.4
MONOCYTES_44
132.3
MONOCYTES_45
131.9
MONOCYTES_46
131.3
MONOCYTES_47
131.3
MONOCYTES_48
131.1
MONOCYTES_49
129.7
MONOCYTES_50
129.4
MONOCYTES_51
129.2
MONOCYTES_52
129.1
MONOCYTES_53
129.0
MONOCYTES_54
128.8
MONOCYTES_55
128.5
MONOCYTES_56
128.2
MONOCYTES_57
128.1
MONOCYTES_58
127.8
MONOCYTES_59
127.0
MONOCYTES_60
126.9
MONOCYTES_61
126.8
MONOCYTES_62
126.4
MONOCYTES_63
126.3
MONOCYTES_64
126.2
MONOCYTES_65
125.6
MONOCYTES_66
125.6
MONOCYTES_67
125.1
MONOCYTES_68
124.7
MONOCYTES_69
124.3
MONOCYTES_70
124.2
MONOCYTES_71
124.1
MONOCYTES_72
124.0
MONOCYTES_73
123.4
MONOCYTES_74
123.2
MONOCYTES_75
122.7
MONOCYTES_76
119.4
MONOCYTES_77
116.3
MONOCYTES_78
115.8
MONOCYTES_79
115.5
MONOCYTES_80
113.0
MONOCYTES_81
110.6
MONOCYTES_82
110.4
MONOCYTES_83
110.3
MONOCYTES_84
109.9
MONOCYTES_85
108.3
MONOCYTES_86
105.9
MONOCYTES_87
103.8
MONOCYTES_88
103.7
MONOCYTES_89
97.9
MONOCYTES_90
97.7
MONOCYTES_91
95.7
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Non-classical monocyte TPM: 244.2
Samples: 90
Max TPM: 312.2
Min TPM: 180.0
M2_1
312.2
M2_2
299.7
M2_3
298.5
M2_4
297.4
M2_5
292.5
M2_6
291.7
M2_7
291.0
M2_8
287.7
M2_9
286.8
M2_10
285.2
M2_11
282.7
M2_12
280.2
M2_13
277.7
M2_14
275.9
M2_15
275.4
M2_16
274.7
M2_17
273.8
M2_18
273.2
M2_19
270.0
M2_20
269.2
M2_21
267.4
M2_22
267.2
M2_23
262.3
M2_24
262.0
M2_25
260.8
M2_26
260.5
M2_27
260.0
M2_28
258.6
M2_29
257.4
M2_30
255.9
M2_31
255.2
M2_32
253.3
M2_33
253.0
M2_34
250.7
M2_35
250.6
M2_36
249.8
M2_37
248.2
M2_38
248.0
M2_39
247.1
M2_40
246.0
M2_41
245.3
M2_42
244.8
M2_43
244.2
M2_44
243.3
M2_45
242.9
M2_46
241.6
M2_47
239.8
M2_48
238.9
M2_49
238.8
M2_50
238.8
M2_51
238.4
M2_52
236.4
M2_53
236.4
M2_54
236.1
M2_55
234.9
M2_56
234.9
M2_57
233.4
M2_58
233.3
M2_59
233.2
M2_60
232.4
M2_61
232.0
M2_62
229.8
M2_63
229.6
M2_64
229.5
M2_65
225.6
M2_66
224.7
M2_67
223.6
M2_68
223.0
M2_69
222.9
M2_70
221.6
M2_71
221.4
M2_72
221.3
M2_73
219.6
M2_74
217.8
M2_75
215.5
M2_76
215.1
M2_77
214.5
M2_78
212.2
M2_79
210.5
M2_80
210.0
M2_81
209.3
M2_82
205.3
M2_83
204.7
M2_84
203.5
M2_85
202.8
M2_86
198.9
M2_87
197.8
M2_88
195.2
M2_89
183.2
M2_90
180.0
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