A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
18.1
nTPM
Monaco:
80.2
nTPM
Schmiedel:
69.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.1
HPA sample
nTPM
Classical monocyte nTPM: 11.3
Samples: 6
Max nTPM: 14.9
Min nTPM: 8.5
P10809_1003
14.9
P10809_1020
11.0
P10809_1039
12.6
P10809_1058
9.8
P10809_1080
10.7
P10809_1107
8.5
Intermediate monocyte nTPM: 15.1
Samples: 6
Max nTPM: 22.9
Min nTPM: 9.4
P10809_1004
22.9
P10809_1023
18.2
P10809_1042
15.3
P10809_1061
9.4
P10809_1081
11.2
P10809_1108
13.5
Non-classical monocyte nTPM: 18.1
Samples: 5
Max nTPM: 26.1
Min nTPM: 9.1
P10809_1005
22.3
P10809_1053
26.1
P10809_1072
9.1
P10809_1082
14.1
P10809_1109
18.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.2
Monaco sample
nTPM
Classical monocyte nTPM: 53.1
Samples: 4
Max nTPM: 55.9
Min nTPM: 46.6
RHH5313_R3680
54.1
RHH5221_R3593
55.9
RHH5250_R3622
55.9
RHH5279_R3651
46.6
Intermediate monocyte nTPM: 69.2
Samples: 4
Max nTPM: 81.4
Min nTPM: 52.5
RHH5314_R3681
52.5
RHH5222_R3594
81.4
RHH5251_R3623
69.6
RHH5280_R3652
73.3
Non-classical monocyte nTPM: 80.2
Samples: 4
Max nTPM: 100.4
Min nTPM: 60.7
RHH5315_R3682
70.3
RHH5223_R3595
89.3
RHH5252_R3624
60.7
RHH5281_R3653
100.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.0
Schmiedel sample id
TPM
Classical monocyte TPM: 37.0
Samples: 91
Max TPM: 71.8
Min TPM: 21.4
MONOCYTES_1
71.8
MONOCYTES_2
52.0
MONOCYTES_3
50.0
MONOCYTES_4
49.9
MONOCYTES_5
49.6
MONOCYTES_6
46.6
MONOCYTES_7
44.6
MONOCYTES_8
44.5
MONOCYTES_9
44.2
MONOCYTES_10
44.1
MONOCYTES_11
43.0
MONOCYTES_12
42.9
MONOCYTES_13
42.7
MONOCYTES_14
42.6
MONOCYTES_15
42.0
MONOCYTES_16
41.8
MONOCYTES_17
41.6
MONOCYTES_18
41.4
MONOCYTES_19
41.3
MONOCYTES_20
41.3
MONOCYTES_21
41.0
MONOCYTES_22
40.9
MONOCYTES_23
40.9
MONOCYTES_24
40.8
MONOCYTES_25
40.1
MONOCYTES_26
40.0
MONOCYTES_27
39.9
MONOCYTES_28
39.5
MONOCYTES_29
39.4
MONOCYTES_30
39.1
MONOCYTES_31
38.9
MONOCYTES_32
38.7
MONOCYTES_33
38.7
MONOCYTES_34
38.4
MONOCYTES_35
37.9
MONOCYTES_36
37.8
MONOCYTES_37
37.6
MONOCYTES_38
37.4
MONOCYTES_39
37.3
MONOCYTES_40
36.9
MONOCYTES_41
36.8
MONOCYTES_42
36.8
MONOCYTES_43
36.8
MONOCYTES_44
36.4
MONOCYTES_45
36.4
MONOCYTES_46
36.3
MONOCYTES_47
36.3
MONOCYTES_48
36.1
MONOCYTES_49
36.0
MONOCYTES_50
35.9
MONOCYTES_51
35.8
MONOCYTES_52
35.7
MONOCYTES_53
35.4
MONOCYTES_54
35.4
MONOCYTES_55
35.1
MONOCYTES_56
34.7
MONOCYTES_57
34.4
MONOCYTES_58
34.3
MONOCYTES_59
33.9
MONOCYTES_60
33.8
MONOCYTES_61
33.8
MONOCYTES_62
33.6
MONOCYTES_63
33.5
MONOCYTES_64
33.5
MONOCYTES_65
33.0
MONOCYTES_66
32.9
MONOCYTES_67
32.8
MONOCYTES_68
32.6
MONOCYTES_69
32.5
MONOCYTES_70
32.5
MONOCYTES_71
32.2
MONOCYTES_72
32.1
MONOCYTES_73
31.8
MONOCYTES_74
31.8
MONOCYTES_75
31.6
MONOCYTES_76
31.5
MONOCYTES_77
31.4
MONOCYTES_78
31.2
MONOCYTES_79
31.1
MONOCYTES_80
30.9
MONOCYTES_81
30.9
MONOCYTES_82
30.9
MONOCYTES_83
30.5
MONOCYTES_84
29.2
MONOCYTES_85
29.1
MONOCYTES_86
28.8
MONOCYTES_87
28.8
MONOCYTES_88
27.6
MONOCYTES_89
25.9
MONOCYTES_90
25.0
MONOCYTES_91
21.4
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Non-classical monocyte TPM: 69.0
Samples: 90
Max TPM: 105.0
Min TPM: 49.9
M2_1
105.0
M2_2
91.2
M2_3
89.1
M2_4
87.6
M2_5
86.7
M2_6
85.8
M2_7
82.3
M2_8
82.1
M2_9
81.6
M2_10
80.8
M2_11
79.1
M2_12
78.8
M2_13
78.3
M2_14
78.1
M2_15
78.0
M2_16
77.5
M2_17
77.2
M2_18
75.8
M2_19
75.8
M2_20
75.7
M2_21
75.6
M2_22
75.3
M2_23
75.2
M2_24
74.7
M2_25
73.5
M2_26
73.2
M2_27
72.9
M2_28
72.9
M2_29
72.8
M2_30
72.6
M2_31
72.4
M2_32
72.1
M2_33
71.7
M2_34
70.9
M2_35
70.9
M2_36
70.8
M2_37
70.5
M2_38
69.9
M2_39
69.8
M2_40
69.7
M2_41
69.7
M2_42
69.2
M2_43
68.9
M2_44
68.5
M2_45
68.5
M2_46
68.5
M2_47
68.3
M2_48
68.3
M2_49
67.8
M2_50
66.5
M2_51
66.4
M2_52
66.1
M2_53
66.0
M2_54
65.8
M2_55
65.6
M2_56
65.3
M2_57
64.9
M2_58
64.9
M2_59
64.9
M2_60
64.6
M2_61
64.2
M2_62
64.1
M2_63
63.8
M2_64
63.3
M2_65
63.3
M2_66
63.1
M2_67
63.1
M2_68
62.8
M2_69
62.7
M2_70
61.7
M2_71
60.8
M2_72
60.7
M2_73
59.9
M2_74
59.7
M2_75
59.6
M2_76
59.0
M2_77
59.0
M2_78
58.9
M2_79
58.8
M2_80
58.7
M2_81
58.1
M2_82
57.7
M2_83
57.0
M2_84
56.8
M2_85
56.7
M2_86
56.0
M2_87
54.1
M2_88
52.4
M2_89
51.2
M2_90
49.9
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