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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:46.4 nTPM
HPA Brain:56.7 nTPM
GTEx:46.4 nTPM
FANTOM5:127.7 Scaled Tags Per Million
Pig:55.2 nTPM
Mouse:38.9 nTPM
Allen mouse:12.0 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA017335Antibody HPA018011
Glial cells MediumHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.7
Sample id Sample description nTPM
Hippocampus
nTPM: 53.6
1911 Female, age 85, right hemisphere 59.1
2529 Female, age 94, left hemisphere 58.5
2621 Female, age 67, right hemisphere 58.1
2148 Female, age 91, left hemisphere 54.7
1898 Male, age 80, left hemisphere 47.6
1855 Male, age 76, left hemisphere 43.6
Dentate gyrus
nTPM: 54.3
2246 Female, age 85, both hemispheres 59.3
2531 Female, age 67, both hemispheres 58.0
2010 Male, age 76, both hemispheres 56.5
2528 Male, age 74, both hemispheres 55.4
1927 Female, age 91, both hemispheres 51.4
2530 Female, age 94, left hemisphere 45.3
Entorhinal gyrus
nTPM: 55.6
1787 Male, age 76, left hemisphere 58.8
2764 Male, age 80, right hemisphere 56.4
2117 Female, age 91, right hemisphere 56.2
2613 Female, age 94, left hemisphere 54.3
2686 Male, age 75, right hemisphere 54.0
1938 Female, age 85, left hemisphere 53.9
Hippocampus, CA1
nTPM: 53.0
2045 Male, age 76, both hemispheres 56.0
2527 Male, age 74, both hemispheres 55.4
2082 Female, age 91, right hemisphere 53.3
1873 Female, age 85, both hemispheres 50.2
2749 Male, age 80, left hemisphere 50.1
Hippocampus, CA2
nTPM: 52.6
1940 Female, age 85, left hemisphere 55.6
1892 Male, age 76, both hemispheres 53.4
1963 Male, age 80, left hemisphere 53.4
2113 Female, age 91, right hemisphere 52.2
2437 Female, age 94, left hemisphere 51.7
2249 Male, age 74, both hemispheres 49.4
Hippocampus, CA3
nTPM: 53.5
1891 Female, age 85, both hemispheres 60.9
2137 Male, age 80, left hemisphere 55.7
1867 Male, age 76, both hemispheres 53.6
2436 Male, age 74, both hemispheres 52.4
2861 Female, age 67, both hemispheres 51.2
2620 Female, age 94, left hemisphere 47.5
Parahippocampal cortex
nTPM: 56.7
2018 Male, age 76, both hemispheres 64.6
2693 Female, age 94, both hemispheres 63.0
2692 Male, age 74, both hemispheres 60.1
2532 Female, age 72, left hemisphere 57.5
1850 Male, age 80, both hemispheres 56.8
2245 Female, age 91, both hemispheres 55.6
1990 Female, age 91, right hemisphere 55.1
1933 Female, age 85, both hemispheres 54.9
2622 Female, age 67, right hemisphere 51.6
2250 Female, age 67, right hemisphere 48.1
Perirhinal gyrus
nTPM: 53.2
1794 Male, age 80, right hemisphere 57.1
1841 Female, age 85, right hemisphere 56.5
2521 Female, age 94, right hemisphere 54.5
2848 Male, age 76, right hemisphere 52.0
1847 Female, age 91, left hemisphere 45.9
Subiculum
nTPM: 54.7
2042 Male, age 76, both hemispheres 64.1
1901 Male, age 80, both hemispheres 58.3
1977 Female, age 85, both hemispheres 56.6
2619 Male, age 74, both hemispheres 50.2
2729 Female, age 91, right hemisphere 49.5
2438 Female, age 94, left hemisphere 49.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.4
Samples: 197

Max nTPM: 90.4
Min nTPM: 13.4
Std nTPM: 10.0
Median nTPM: 45.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 90.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 79.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 76.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 75.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 67.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 67.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 67.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 65.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 65.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 64.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 64.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 64.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 62.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 62.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 61.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 61.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 59.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 58.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 58.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 58.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 58.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 57.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 57.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 57.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 57.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 57.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 56.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 55.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 55.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 55.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 55.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 54.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 54.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 53.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 53.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 53.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 53.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 53.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 53.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 53.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 53.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 52.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 52.8
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 52.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 52.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 52.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 52.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 52.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 52.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 51.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 51.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 51.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 51.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 51.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 50.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 50.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 50.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 50.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 50.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 50.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 50.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 49.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 49.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 49.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 49.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 49.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 49.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 49.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 49.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 49.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 48.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 48.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 48.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 48.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 48.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 48.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 47.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 47.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 47.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 47.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 47.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 47.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 47.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 47.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 47.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 46.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 46.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 46.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 46.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 46.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 46.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 46.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 46.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 46.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 46.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 46.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 46.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 46.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 45.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 45.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 45.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 45.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 45.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 45.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 45.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 44.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 44.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 44.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 44.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 44.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 44.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 44.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 44.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 44.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 44.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 44.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 44.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 44.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 43.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 43.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 43.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 43.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 43.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 43.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 43.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 43.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 43.4
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 43.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 43.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 42.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 42.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 42.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 42.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 42.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 42.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 41.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 41.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 41.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 41.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 41.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 41.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 40.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 40.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 40.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 40.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 40.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 40.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 40.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 40.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 39.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 39.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 39.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 39.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 39.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 39.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 39.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 38.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 38.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 38.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 38.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 38.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 38.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 38.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 37.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 37.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 37.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 37.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 37.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 37.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 37.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 36.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 36.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 35.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 35.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 35.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 35.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 35.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 34.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 34.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 34.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 33.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 33.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 33.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 33.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 32.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 32.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 32.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 32.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 31.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 31.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 30.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 30.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 30.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 29.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 26.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 17.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 13.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

127.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 127.7
FF:10169-103B7 60 years, female 138.1
FF:10153-102I9 76 years, female 117.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.2
Pig sample Sample description nTPM
Subiculum
nTPM: 54.8
Samples: 4

Max nTPM: 57.7
Min nTPM: 50.7
Sample A Female 50.7
Sample B Female 55.2
Sample C Male 55.5
Sample D Male 57.7
Dorsal hippocampus
nTPM: 55.2
Samples: 4

Max nTPM: 60.8
Min nTPM: 50.5
Sample A Female 50.5
Sample B Female 51.3
Sample C Male 58.2
Sample D Male 60.8
Entorhinal cortex
nTPM: 49.1
Samples: 4

Max nTPM: 53.3
Min nTPM: 45.5
Sample A Female 53.3
Sample B Female 46.4
Sample C Male 45.5
Sample D Male 51.3
Ventral hippocampus
nTPM: 54.8
Samples: 4

Max nTPM: 59.3
Min nTPM: 51.0
Sample A Female 51.0
Sample B Female 54.4
Sample C Male 54.4
Sample D Male 59.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.0
Samples: 4

Max nTPM: 42.5
Min nTPM: 35.3
Sample A Male 39.5
Sample B Male 42.5
Sample C Female 38.5
Sample D Female 35.3
Hippocampal formation
nTPM: 37.1
Samples: 4

Max nTPM: 41.8
Min nTPM: 33.5
Sample A Male 36.6
Sample B Male 41.8
Sample C Female 33.5
Sample D Female 36.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.0
69818030 Antisense, RP_050510_04_C06, Mouse strain C57BL/6J (56 days, male) 12.0

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