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POLDIP2
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TISSUE HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:49.8 nTPM
HPA Brain:57.0 nTPM
GTEx:49.8 nTPM
FANTOM5:49.0 Scaled Tags Per Million
Pig:51.3 nTPM
Mouse:91.6 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.0
Sample id Sample description nTPM
Hippocampus
nTPM: 53.4
1898 Male, age 80, left hemisphere 61.0
1855 Male, age 76, left hemisphere 54.2
2621 Female, age 67, right hemisphere 52.8
2148 Female, age 91, left hemisphere 52.0
2529 Female, age 94, left hemisphere 51.6
1911 Female, age 85, right hemisphere 48.9
Dentate gyrus
nTPM: 50.6
1927 Female, age 91, both hemispheres 56.2
2530 Female, age 94, left hemisphere 52.8
2010 Male, age 76, both hemispheres 52.0
2246 Female, age 85, both hemispheres 48.5
2528 Male, age 74, both hemispheres 48.2
2531 Female, age 67, both hemispheres 45.9
Entorhinal gyrus
nTPM: 52.7
2764 Male, age 80, right hemisphere 55.9
1938 Female, age 85, left hemisphere 55.6
2613 Female, age 94, left hemisphere 54.6
1787 Male, age 76, left hemisphere 52.1
2117 Female, age 91, right hemisphere 49.7
2686 Male, age 75, right hemisphere 48.2
Hippocampus, CA1
nTPM: 53.3
2749 Male, age 80, left hemisphere 70.4
1873 Female, age 85, both hemispheres 53.7
2045 Male, age 76, both hemispheres 50.1
2527 Male, age 74, both hemispheres 49.0
2082 Female, age 91, right hemisphere 43.3
Hippocampus, CA2
nTPM: 51.7
1892 Male, age 76, both hemispheres 59.6
1963 Male, age 80, left hemisphere 57.7
2437 Female, age 94, left hemisphere 51.5
2249 Male, age 74, both hemispheres 50.3
2113 Female, age 91, right hemisphere 46.6
1940 Female, age 85, left hemisphere 44.3
Hippocampus, CA3
nTPM: 54.8
2436 Male, age 74, both hemispheres 64.8
2137 Male, age 80, left hemisphere 57.8
1867 Male, age 76, both hemispheres 53.1
2620 Female, age 94, left hemisphere 52.0
2861 Female, age 67, both hemispheres 51.6
1891 Female, age 85, both hemispheres 49.5
Parahippocampal cortex
nTPM: 52.6
1850 Male, age 80, both hemispheres 58.6
2245 Female, age 91, both hemispheres 55.7
2250 Female, age 67, right hemisphere 55.2
1933 Female, age 85, both hemispheres 54.4
2532 Female, age 72, left hemisphere 53.4
2622 Female, age 67, right hemisphere 52.9
2693 Female, age 94, both hemispheres 51.4
2692 Male, age 74, both hemispheres 51.0
1990 Female, age 91, right hemisphere 47.6
2018 Male, age 76, both hemispheres 46.0
Perirhinal gyrus
nTPM: 57.0
1847 Female, age 91, left hemisphere 66.0
1841 Female, age 85, right hemisphere 58.7
1794 Male, age 80, right hemisphere 58.5
2521 Female, age 94, right hemisphere 52.2
2848 Male, age 76, right hemisphere 49.5
Subiculum
nTPM: 50.0
1901 Male, age 80, both hemispheres 55.3
1977 Female, age 85, both hemispheres 51.3
2619 Male, age 74, both hemispheres 49.2
2042 Male, age 76, both hemispheres 48.3
2729 Female, age 91, right hemisphere 47.8
2438 Female, age 94, left hemisphere 47.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.8
Samples: 197

Max nTPM: 77.7
Min nTPM: 29.1
Std nTPM: 9.3
Median nTPM: 49.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 77.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 77.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 73.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 72.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 69.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 69.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 68.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 65.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 65.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 65.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 64.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 64.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 64.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 63.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 63.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 63.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 63.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 63.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 62.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 61.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 61.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 61.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 60.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 60.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 60.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 60.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 60.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 60.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 59.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 59.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 59.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 59.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 59.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 59.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 59.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 59.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 58.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 58.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 58.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 58.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 58.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 58.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 57.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 57.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 57.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 57.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 56.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 56.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 56.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 56.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 56.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 55.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 55.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 55.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 55.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 55.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 55.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 55.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 54.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 54.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 54.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 54.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 54.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 53.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 53.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 53.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 53.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 53.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 53.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 53.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 53.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 53.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 52.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 52.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 52.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 52.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 52.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 52.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 51.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 51.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 51.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 51.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 50.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 50.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 50.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 50.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 50.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 50.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 50.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 50.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 49.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 49.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 49.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 49.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 49.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 49.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 49.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 49.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 49.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 49.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 49.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 48.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 48.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 48.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 48.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 48.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 48.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 48.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 48.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 48.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 48.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 48.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 47.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 47.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 47.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 47.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 47.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 47.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 46.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 46.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 46.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 46.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 46.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 46.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 46.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 45.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 45.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 45.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 45.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 45.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 45.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 45.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 44.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 44.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 44.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 44.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 44.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 44.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 44.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 44.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 43.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 43.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 43.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 43.3
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 43.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 43.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 43.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 42.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 42.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 42.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 41.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 41.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 41.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 41.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 41.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 41.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 41.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 41.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 41.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 40.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 40.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 40.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 40.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 40.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 40.5
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 40.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 39.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 39.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 39.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 39.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 39.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 39.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 39.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 39.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 38.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 38.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 38.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 38.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 38.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 38.1
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 38.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 37.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 37.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 36.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 35.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 35.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 35.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 35.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 35.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 35.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 34.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 33.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 33.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 32.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 31.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 31.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 29.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.0
FF:10169-103B7 60 years, female 57.1
FF:10153-102I9 76 years, female 40.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.3
Pig sample Sample description nTPM
Subiculum
nTPM: 48.3
Samples: 4

Max nTPM: 61.7
Min nTPM: 42.6
Sample A Female 61.7
Sample B Female 44.7
Sample C Male 42.6
Sample D Male 44.0
Dorsal hippocampus
nTPM: 51.3
Samples: 4

Max nTPM: 61.0
Min nTPM: 40.9
Sample A Female 61.0
Sample B Female 49.4
Sample C Male 53.9
Sample D Male 40.9
Entorhinal cortex
nTPM: 50.7
Samples: 4

Max nTPM: 53.3
Min nTPM: 44.5
Sample A Female 52.2
Sample B Female 53.3
Sample C Male 52.6
Sample D Male 44.5
Ventral hippocampus
nTPM: 47.6
Samples: 4

Max nTPM: 59.1
Min nTPM: 35.5
Sample A Female 47.3
Sample B Female 35.5
Sample C Male 59.1
Sample D Male 48.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.8
Samples: 4

Max nTPM: 91.9
Min nTPM: 77.6
Sample A Male 89.7
Sample B Male 87.9
Sample C Female 91.9
Sample D Female 77.6
Hippocampal formation
nTPM: 91.6
Samples: 4

Max nTPM: 97.5
Min nTPM: 86.1
Sample A Male 97.5
Sample B Male 86.1
Sample C Female 95.7
Sample D Female 86.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
386018 Antisense, RP_040804_01_A05, Mouse strain C57BL/6J (56 days, male) 2.7

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