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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
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Tissue proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:29.2 nTPM
GTEx:29.2 nTPM
FANTOM5:40.1 Scaled Tags Per Million
Pig:25.1 nTPM
Mouse:86.9 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 29.2
Samples: 105

Max nTPM: 40.4
Min nTPM: 14.4
Std nTPM: 4.9
Median nTPM:
218_1 71 years, female 40.4
377_1 82 years, female 40.4
189_1 76 years, male 39.6
163_1 78 years, male 38.3
319_1 81 years, male 37.4
172_1 72 years, female 36.8
322_1 76 years, male 36.8
321_1 62 years, female 36.6
349_1 83 years, male 36.0
317_1 60 years, male 35.9
406_1 79 years, male 35.8
376_1 75 years, female 35.6
425_1 59 years, female 35.4
293_1 68 years, female 34.7
2_1 77 years, female 34.6
251_1 78 years, male 34.6
405_1 91 years, male 34.6
137_1 83 years, male 33.9
480_1 63 years, male 33.9
318_1 68 years, male 33.7
347_1 72 years, male 33.4
404_1 82 years, female 33.0
292_1 71 years, male 32.7
229_1 69 years, female 32.6
335_1 73 years, female 32.6
308_1 70 years, female 32.1
384_1 83 years, male 32.0
379_1 60 years, male 31.9
320_1 89 years, female 31.7
266_1 85 years, male 31.6
41_1 94 years, female 31.5
42_1 85 years, male 31.4
177_1 74 years, male 31.4
243_1 75 years, male 31.1
35_1 74 years, female 31.0
237_1 82 years, male 31.0
394_1 75 years, female 30.9
506_1 65 years, male 30.9
452_1 88 years, female 30.8
495_1 57 years, female 30.7
145_1 84 years, male 30.4
173_1 67 years, male 30.3
526_1 61 years, male 30.3
291_1 76 years, male 30.2
447_1 81 years, male 30.1
316_1 62 years, male 29.7
386_1 76 years, male 29.7
139_1 64 years, female 29.6
348_1 84 years, male 29.5
389_1 86 years, female 29.5
468_1 89 years, male 29.5
18_1 88 years, male 29.3
352_1 62 years, male 29.2
153_1 70 years, female 29.1
246_1 77 years, male 29.1
6_1 73 years, female 29.0
264_1 73 years, female 29.0
355_1 70 years, female 28.6
375_1 74 years, female 28.6
265_1 87 years, male 28.5
311_1 78 years, male 28.5
356_1 87 years, female 28.4
295_1 61 years, female 28.3
517_1 88 years, male 28.3
286_1 68 years, female 28.0
503_1 68 years, male 27.9
350_1 84 years, female 27.7
353_1 82 years, female 27.7
126_1 63 years, male 27.6
351_1 91 years, male 27.6
324_1 76 years, male 27.4
17_1 71 years, male 27.3
314_1 67 years, male 27.2
354_1 81 years, female 26.9
499_1 55 years, female 26.9
518_1 75 years, female 26.9
9_1 66 years, female 26.8
307_1 66 years, female 26.8
109_1 81 years, female 26.5
313_1 79 years, female 26.3
4_1 88 years, female 26.2
115_1 83 years, male 26.1
396_1 62 years, male 26.1
117_1 61 years, male 26.0
288_1 66 years, female 25.6
162_1 79 years, female 25.5
254_1 77 years, female 25.4
315_1 62 years, female 25.0
99_1 64 years, male 24.8
81_1 67 years, male 24.4
119_1 70 years, female 24.3
120_1 70 years, female 24.1
43_1 64 years, female 23.8
217_1 76 years, male 23.7
415_1 77 years, female 22.6
466_1 57 years, female 22.4
142_1 61 years, female 22.3
414_1 84 years, female 21.6
32_1 67 years, male 20.6
413_1 59 years, female 20.3
149_1 88 years, male 19.4
501_1 88 years, male 18.7
89_1 63 years, male 18.1
490_1 67 years, female 16.6
491_1 89 years, female 14.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

40.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 40.1
FF:10030-101E3 24-65 years, mixed 40.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.1
Pig sample Sample description nTPM
Retina
nTPM: 25.2
Samples: 4

Max nTPM: 28.0
Min nTPM: 22.9
Sample A Female 22.9
Sample B Female 26.5
Sample C Male 28.0
Sample D Male 23.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.9
Mouse sample Sample description nTPM
Retina
nTPM: 86.9
Samples: 4

Max nTPM: 96.8
Min nTPM: 83.4
Sample A Male 96.8
Sample B Male 83.5
Sample C Female 83.4
Sample D Female 84.0

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