A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.8
nTPM
Monaco:
21.0
nTPM
Schmiedel:
78.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.8
HPA sample
nTPM
Classical monocyte nTPM: 10.8
Samples: 6
Max nTPM: 15.7
Min nTPM: 5.7
P10809_1003
5.7
P10809_1020
8.2
P10809_1039
10.1
P10809_1058
15.7
P10809_1080
11.5
P10809_1107
13.4
Intermediate monocyte nTPM: 5.1
Samples: 6
Max nTPM: 7.4
Min nTPM: 1.9
P10809_1004
5.3
P10809_1023
1.9
P10809_1042
1.9
P10809_1061
7.4
P10809_1081
6.9
P10809_1108
7.2
Non-classical monocyte nTPM: 5.2
Samples: 5
Max nTPM: 10.6
Min nTPM: 2.5
P10809_1005
2.5
P10809_1053
5.6
P10809_1072
10.6
P10809_1082
3.7
P10809_1109
3.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.0
Monaco sample
nTPM
Classical monocyte nTPM: 21.0
Samples: 4
Max nTPM: 28.2
Min nTPM: 17.1
RHH5313_R3680
17.1
RHH5221_R3593
28.2
RHH5250_R3622
19.9
RHH5279_R3651
18.8
Intermediate monocyte nTPM: 19.2
Samples: 4
Max nTPM: 24.4
Min nTPM: 9.8
RHH5314_R3681
24.4
RHH5222_R3594
18.6
RHH5251_R3623
23.8
RHH5280_R3652
9.8
Non-classical monocyte nTPM: 12.2
Samples: 4
Max nTPM: 22.8
Min nTPM: 4.3
RHH5315_R3682
16.4
RHH5223_R3595
5.3
RHH5252_R3624
22.8
RHH5281_R3653
4.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.5
Schmiedel sample id
TPM
Classical monocyte TPM: 78.5
Samples: 91
Max TPM: 135.1
Min TPM: 33.2
MONOCYTES_1
135.1
MONOCYTES_2
119.5
MONOCYTES_3
117.5
MONOCYTES_4
115.8
MONOCYTES_5
113.5
MONOCYTES_6
112.2
MONOCYTES_7
107.9
MONOCYTES_8
107.1
MONOCYTES_9
106.0
MONOCYTES_10
105.2
MONOCYTES_11
101.0
MONOCYTES_12
100.6
MONOCYTES_13
99.0
MONOCYTES_14
98.9
MONOCYTES_15
97.1
MONOCYTES_16
95.7
MONOCYTES_17
95.6
MONOCYTES_18
94.9
MONOCYTES_19
94.6
MONOCYTES_20
94.3
MONOCYTES_21
94.0
MONOCYTES_22
93.9
MONOCYTES_23
92.9
MONOCYTES_24
92.7
MONOCYTES_25
92.6
MONOCYTES_26
92.1
MONOCYTES_27
90.8
MONOCYTES_28
90.7
MONOCYTES_29
89.7
MONOCYTES_30
89.5
MONOCYTES_31
89.0
MONOCYTES_32
88.1
MONOCYTES_33
88.0
MONOCYTES_34
87.3
MONOCYTES_35
87.3
MONOCYTES_36
87.1
MONOCYTES_37
86.3
MONOCYTES_38
85.3
MONOCYTES_39
82.9
MONOCYTES_40
82.5
MONOCYTES_41
82.3
MONOCYTES_42
81.0
MONOCYTES_43
80.5
MONOCYTES_44
79.4
MONOCYTES_45
78.0
MONOCYTES_46
77.3
MONOCYTES_47
77.2
MONOCYTES_48
76.5
MONOCYTES_49
76.4
MONOCYTES_50
76.2
MONOCYTES_51
74.2
MONOCYTES_52
73.7
MONOCYTES_53
73.1
MONOCYTES_54
72.8
MONOCYTES_55
72.7
MONOCYTES_56
72.2
MONOCYTES_57
72.1
MONOCYTES_58
71.3
MONOCYTES_59
70.6
MONOCYTES_60
70.4
MONOCYTES_61
70.0
MONOCYTES_62
69.6
MONOCYTES_63
68.4
MONOCYTES_64
67.7
MONOCYTES_65
65.9
MONOCYTES_66
64.3
MONOCYTES_67
64.1
MONOCYTES_68
63.9
MONOCYTES_69
62.2
MONOCYTES_70
61.3
MONOCYTES_71
60.0
MONOCYTES_72
59.9
MONOCYTES_73
59.7
MONOCYTES_74
58.9
MONOCYTES_75
58.4
MONOCYTES_76
57.7
MONOCYTES_77
57.3
MONOCYTES_78
55.4
MONOCYTES_79
53.7
MONOCYTES_80
53.1
MONOCYTES_81
51.7
MONOCYTES_82
50.0
MONOCYTES_83
49.2
MONOCYTES_84
47.9
MONOCYTES_85
47.5
MONOCYTES_86
47.3
MONOCYTES_87
47.2
MONOCYTES_88
45.2
MONOCYTES_89
44.5
MONOCYTES_90
43.4
MONOCYTES_91
33.2
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Non-classical monocyte TPM: 39.8
Samples: 90
Max TPM: 96.8
Min TPM: 9.6
M2_1
96.8
M2_2
77.4
M2_3
76.3
M2_4
75.2
M2_5
72.9
M2_6
72.7
M2_7
66.7
M2_8
66.6
M2_9
65.8
M2_10
65.2
M2_11
64.3
M2_12
64.0
M2_13
61.0
M2_14
60.9
M2_15
60.4
M2_16
60.4
M2_17
58.6
M2_18
58.4
M2_19
58.3
M2_20
57.9
M2_21
57.9
M2_22
56.3
M2_23
56.1
M2_24
49.7
M2_25
49.7
M2_26
49.2
M2_27
47.6
M2_28
46.9
M2_29
46.5
M2_30
45.9
M2_31
45.4
M2_32
45.0
M2_33
43.7
M2_34
43.6
M2_35
43.1
M2_36
42.7
M2_37
42.6
M2_38
41.9
M2_39
41.5
M2_40
41.1
M2_41
39.7
M2_42
39.1
M2_43
39.0
M2_44
38.8
M2_45
37.5
M2_46
36.6
M2_47
35.4
M2_48
35.4
M2_49
33.9
M2_50
33.4
M2_51
32.9
M2_52
32.7
M2_53
32.5
M2_54
30.2
M2_55
29.8
M2_56
29.7
M2_57
29.5
M2_58
29.0
M2_59
27.8
M2_60
27.7
M2_61
27.1
M2_62
26.6
M2_63
26.5
M2_64
26.3
M2_65
25.8
M2_66
25.8
M2_67
25.2
M2_68
25.2
M2_69
24.7
M2_70
24.3
M2_71
23.8
M2_72
23.7
M2_73
23.1
M2_74
23.1
M2_75
22.0
M2_76
21.6
M2_77
20.7
M2_78
20.3
M2_79
19.9
M2_80
19.8
M2_81
19.6
M2_82
19.4
M2_83
17.8
M2_84
17.4
M2_85
16.6
M2_86
16.5
M2_87
15.4
M2_88
15.2
M2_89
13.6
M2_90
9.6
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