MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.9 nTPM
HPA Brain:43.2 nTPM
GTEx:51.9 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:28.6 nTPM
Mouse:24.3 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.3
1830 Male, age 51, unknown 41.4
2019 Male, age 18, unknown 40.2
2411 Female, age 72, unknown 39.2
2828 Female, age 72, unknown 39.2
1833 Male, age 53, unknown 39.1
1870 Female, age 42, unknown 39.1
2666 Male, age 74, left hemisphere 36.5
1827 Male, age 72, unknown 29.7
2219 Male, age 76, both hemispheres 29.3
2586 Male, age 75, left hemisphere 29.0
Dorsal raphe nucleus
nTPM: 34.2
2750 Male, age 76, both hemispheres 40.0
1828 Male, age 53, unknown 34.7
2298 Female, age 72, unknown 32.9
2047 Male, age 72, unknown 32.0
2016 Female, age 72, unknown 31.3
Inferior colliculus
nTPM: 31.1
1890 Male, age 53, unknown 33.3
2849 Male, age 72, unknown 31.7
1848 Female, age 42, unknown 31.1
2097 Female, age 72, unknown 28.4
Median raphe nucleus
nTPM: 43.2
2220 Male, age 76, midline 43.2
Periaquaductal grey, anterior
nTPM: 28.7
2502 Female, age 75, unknown 29.7
1795 Male, age 51, unknown 28.5
1947 Male, age 18, unknown 27.8
Periaquaductal grey, dorsal
nTPM: 32.1
2850 Male, age 76, both hemispheres 39.1
1831 Male, age 72, unknown 32.0
2464 Female, age 72, unknown 31.5
1840 Male, age 53, unknown 25.7
Periaquaductal grey, lateral
nTPM: 33.1
2140 Male, age 76, both hemispheres 39.1
2272 Male, age 74, both hemispheres 32.3
2053 Male, age 18, unknown 27.8
Pretectal area
nTPM: 31.5
1817 Female, age 42, unknown 35.8
1815 Male, age 53, unknown 35.1
2316 Male, age 76, right hemisphere 35.1
2667 Female, age 75, unknown 35.1
2007 Male, age 72, unknown 32.4
2273 Male, age 74, both hemispheres 31.4
2825 Male, age 18, unknown 30.0
2224 Female, age 72, unknown 29.1
1816 Male, age 51, unknown 27.9
1944 Female, age 72, unknown 27.9
2407 Male, age 75, both hemispheres 26.5
Red nucleus
nTPM: 40.0
1904 Male, age 53, unknown 45.9
2503 Female, age 72, unknown 45.9
1865 Male, age 51, unknown 44.7
2785 Male, age 18, unknown 42.0
2823 Male, age 76, right hemisphere 41.9
1954 Female, age 42, unknown 41.0
2227 Male, age 72, unknown 40.6
2769 Male, age 72, unknown 40.2
1821 Female, age 72, unknown 39.5
2725 Female, age 75, unknown 39.0
2588 Male, age 74, left hemisphere 34.4
2584 Male, age 75, left hemisphere 24.6
Substantia nigra
nTPM: 37.6
2699 Male, age 18, unknown 44.7
2409 Female, age 72, unknown 41.5
2665 Male, age 74, both hemispheres 41.5
1916 Female, age 42, unknown 40.7
1851 Male, age 51, unknown 38.2
1889 Female, age 72, unknown 35.4
1941 Male, age 53, unknown 34.3
2241 Male, age 72, unknown 33.8
2590 Female, age 75, unknown 33.3
2583 Male, age 75, right hemisphere 32.4
Superior colliculus
nTPM: 32.3
1913 Female, age 42, unknown 43.4
1995 Male, age 72, unknown 40.7
2087 Female, age 72, unknown 32.6
1796 Male, age 53, unknown 32.0
2668 Female, age 75, unknown 31.2
1839 Male, age 51, unknown 30.9
2587 Male, age 74, left hemisphere 29.6
2261 Male, age 18, unknown 28.3
1895 Male, age 76, right hemisphere 28.1
2664 Male, age 75, both hemispheres 25.8
Ventral tegmental area
nTPM: 38.3
2218 Male, age 76, both hemispheres 41.5
2410 Female, age 72, unknown 41.3
1915 Female, age 42, unknown 40.6
2223 Female, age 72, unknown 40.1
1942 Male, age 51, unknown 33.4
2021 Male, age 53, unknown 32.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.9
Samples: 139

Max nTPM: 99.5
Min nTPM: 30.4
Std nTPM: 11.6
Median nTPM: 49.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 99.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 86.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 82.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 77.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 76.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 75.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 74.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 73.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 72.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 70.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.7
Samples: 4

Max nTPM: 33.7
Min nTPM: 22.4
Sample A Female 33.7
Sample B Female 27.0
Sample C Male 22.4
Sample D Male 27.5
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 44.7
Min nTPM: 18.8
Sample A Female 44.7
Sample B Female 25.0
Sample C Male 22.0
Sample D Male 18.8
Periaqueductal gray
nTPM: 23.6
Samples: 3

Max nTPM: 25.0
Min nTPM: 22.3
Sample B Female 25.0
Sample C Male 22.3
Sample D Male 23.5
Superior colliculi
nTPM: 28.7
Samples: 4

Max nTPM: 34.3
Min nTPM: 22.7
Sample A Female 32.0
Sample B Female 34.3
Sample C Male 22.7
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.7
Sample A Male 25.1
Sample B Male 21.7
Sample C Female 23.1
Sample D Female 27.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
75694367 Antisense, RP_060518_03_F08, Mouse strain C57BL/6J (56 days, male) 1.2

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