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TISSUE PRIMARY DATA BASAL GANGLIA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:42.1 nTPM
HPA Brain:37.1 nTPM
GTEx:42.1 nTPM
FANTOM5:81.7 Scaled Tags Per Million
Pig:75.8 nTPM
Mouse:17.0 nTPM
Allen mouse:5.8 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA026272Antibody HPA027164
Glial cells MediumLow
Neuronal cells HighMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.5
2289 Male, age 61, right hemisphere 37.4
1781 Male, age 74, unknown 34.9
1854 Male, age 80, left hemisphere 32.1
1857 Female, age 85, left hemisphere 30.8
2290 Female, age 72, unknown 30.4
2846 Female, age 79, unknown 29.6
2288 Male, age 75, left hemisphere 28.7
2481 Female, age 94, left hemisphere 28.4
Globus pallidus, externus
nTPM: 37.0
2567 Female, age 72, unknown 56.6
2646 Male, age 61, right hemisphere 49.5
1996 Male, age 80, right hemisphere 27.9
2395 Male, age 75, both hemispheres 26.2
2772 Female, age 79, unknown 24.7
Globus pallidus, internus
nTPM: 34.1
2566 Female, age 72, unknown 44.0
2111 Female, age 85, right hemisphere 37.3
2778 Female, age 91, both hemispheres 36.0
2037 Male, age 80, right hemisphere 34.1
1818 Male, age 74, unknown 32.5
2287 Male, age 75, right hemisphere 28.0
2483 Female, age 94, right hemisphere 27.1
Nucleus accumbens
nTPM: 30.1
2732 Male, age 80, right hemisphere 34.8
2391 Female, age 94, left hemisphere 33.5
1783 Male, age 74, unknown 30.4
1856 Female, age 91, right hemisphere 30.4
2698 Female, age 72, unknown 30.1
2824 Male, age 61, right hemisphere 28.4
1806 Female, age 85, left hemisphere 28.0
2286 Male, age 75, left hemisphere 25.2
Nucleus basalis of Meynert
nTPM: 37.1
2569 Male, age 61, both hemispheres 50.4
2821 Male, age 75, both hemispheres 35.6
2393 Male, age 80, right hemisphere 32.0
2484 Female, age 94, left hemisphere 30.5
Nucleus of the diagonal band
nTPM: 33.4
2195 Female, age 85, both hemispheres 42.0
1979 Male, age 74, unknown 34.9
2775 Male, age 80, right hemisphere 32.7
1812 Female, age 91, both hemispheres 29.0
2029 Male, age 61, right hemisphere 28.4
Putamen
nTPM: 33.6
2647 Male, age 75, left hemisphere 47.0
2489 Female, age 72, unknown 43.1
1829 Male, age 74, unknown 33.4
2482 Female, age 94, left hemisphere 30.2
1937 Female, age 91, right hemisphere 28.5
1838 Male, age 80, right hemisphere 27.1
2466 Female, age 79, unknown 26.1
Septal nuclei
nTPM: 35.7
2199 Male, age 80, right hemisphere 41.7
2059 Female, age 85, both hemispheres 39.7
2009 Female, age 91, both hemispheres 37.1
2394 Male, age 61, left hemisphere 37.0
2629 Female, age 94, right hemisphere 36.7
1960 Male, age 74, unknown 34.2
2031 Female, age 72, unknown 23.6
Stria terminalis, bed nucleus
nTPM: 36.4
2201 Male, age 74, unknown 42.7
2486 Female, age 94, both hemispheres 34.5
1974 Female, age 91, both hemispheres 32.1

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.1
Samples: 246

Max nTPM: 95.6
Min nTPM: 13.1
Std nTPM: 14.3
Median nTPM: 39.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 95.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 87.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 85.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 81.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 77.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 77.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 77.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 71.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 71.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 69.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 69.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 69.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 68.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 66.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 66.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 65.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 64.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 63.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 63.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 62.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 61.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 60.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 60.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 60.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 60.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 60.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 60.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 60.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 60.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 59.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 59.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 59.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 59.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 59.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 59.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 59.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 58.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 57.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 56.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 56.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 56.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 56.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 56.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 56.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 55.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 55.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 55.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 54.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 54.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 54.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 54.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 53.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 53.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 53.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 53.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 53.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 52.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 52.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 52.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 52.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 51.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 51.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 51.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 51.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 50.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 50.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 50.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 50.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 49.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 49.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 49.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 49.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 48.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 48.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 48.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 48.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 48.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 48.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 48.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 46.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 46.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 46.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 45.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 45.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 45.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 44.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 44.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 44.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 44.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 44.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 44.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 44.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 44.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 43.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 43.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 43.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 43.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 43.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 43.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 43.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 43.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 43.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 42.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 42.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 42.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 42.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 42.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 42.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 42.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 41.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 41.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 41.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 41.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 41.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 40.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 40.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 40.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 40.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 40.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 40.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 40.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 40.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 40.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 39.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 39.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 39.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 39.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 39.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 38.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 38.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 38.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 37.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 37.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 37.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 37.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 37.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 37.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 37.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 37.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 36.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 36.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 36.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 36.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 36.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 36.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 36.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 35.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 35.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 35.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 35.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 35.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 35.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 35.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 35.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 35.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 35.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 35.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 34.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 34.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 34.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 34.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 34.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 34.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 34.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 34.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 34.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 34.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 34.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 34.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 33.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 33.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 33.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 32.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 32.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 32.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 32.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 32.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 32.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 31.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 31.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 31.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 31.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 31.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 31.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 31.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 31.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 31.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 30.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 30.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 30.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 30.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 30.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 30.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 30.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 29.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 29.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 29.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 29.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 29.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 29.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 29.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 29.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 29.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 29.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 29.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 29.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 28.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 28.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 28.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 28.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 27.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 27.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 27.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 27.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 27.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 27.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 27.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 26.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 26.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 26.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 26.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 26.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 25.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 25.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 25.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 25.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 24.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 24.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 24.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 24.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 24.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 24.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 23.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 23.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 23.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 22.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 22.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 22.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 21.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 20.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 18.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 16.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 15.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 15.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 15.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 13.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.6
Samples: 246

Max nTPM: 104.7
Min nTPM: 16.7
Std nTPM: 14.4
Median nTPM: 36.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 104.7
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 98.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 96.0
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 82.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 82.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 80.7
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 79.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 78.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 77.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 74.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 70.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 69.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 68.8
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 66.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 65.1
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 65.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 64.6
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 64.5
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 61.7
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 59.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 59.5
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 58.4
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 57.9
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 56.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 56.0
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 55.6
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 55.3
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 55.0
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 55.0
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 54.9
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 54.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 53.4
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 53.1
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 52.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 52.2
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 52.2
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 51.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 51.8
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 51.7
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 50.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 50.1
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 50.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 49.9
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 49.5
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 49.4
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 49.3
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 49.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 49.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 48.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 48.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 47.9
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 47.5
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 47.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 47.0
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 46.8
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 46.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 46.8
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 46.6
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 46.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 46.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 46.3
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 46.1
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 46.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 46.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 45.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 45.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 45.7
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 45.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 45.2
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 45.2
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 43.0
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 42.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 42.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 42.6
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 42.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 42.4
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 42.4
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 41.8
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 41.8
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 41.8
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 41.7
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 41.6
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 41.1
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 41.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 40.8
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 40.7
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 40.6
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 40.6
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 40.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 40.6
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 40.2
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 40.0
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 40.0
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 40.0
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 40.0
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 39.8
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 39.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 39.5
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 39.4
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 39.3
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 39.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 38.9
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 38.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 38.7
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 38.6
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 38.5
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 38.4
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 38.2
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 38.2
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 38.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 37.9
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 37.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 37.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 37.1
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 37.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 37.0
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 36.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 36.7
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 36.5
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 36.3
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 36.3
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 36.3
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 36.2
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 36.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 36.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 36.0
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 36.0
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 35.9
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 35.8
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 35.8
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 35.7
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 35.6
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 35.5
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 35.4
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 35.4
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 35.2
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 35.2
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 35.1
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 35.1
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 35.1
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 35.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 35.0
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 34.9
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 34.8
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 34.7
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 34.7
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 34.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 34.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 34.4
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 34.2
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 34.2
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 34.2
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 34.0
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 33.7
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 33.7
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 33.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 33.6
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 33.3
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 33.3
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 33.2
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 33.2
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 33.1
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 32.9
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 32.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 32.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 32.8
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 32.5
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 32.2
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 31.9
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 31.6
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 31.5
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 31.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 31.5
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 31.3
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 31.2
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 31.2
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 31.2
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 31.0
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 30.9
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 30.9
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 30.8
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 30.6
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 30.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 30.1
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 30.0
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 30.0
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 29.9
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 29.8
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 29.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 29.7
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 29.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 29.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 29.4
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 29.3
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 29.3
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 29.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 29.1
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 29.0
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 28.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 28.4
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 28.3
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 28.0
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 28.0
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 27.8
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 27.7
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 27.7
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 27.6
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 27.5
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 27.4
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 27.4
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 26.7
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 26.7
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 26.6
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 26.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 26.2
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 25.7
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 25.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 25.6
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 25.4
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 25.4
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 25.3
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 25.3
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 25.0
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 24.8
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 24.8
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 24.5
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 24.5
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 24.3
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 23.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 23.2
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 22.5
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 22.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 22.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 22.0
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 21.5
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 21.3
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 21.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 21.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 21.0
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 20.7
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 20.4
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 19.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 18.5
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 18.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 16.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 16.7
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Brain - Putamen (basal ganglia)
Average nTPM: 40.7
Samples: 205

Max nTPM: 81.3
Min nTPM: 11.8
Std nTPM: 13.4
Median nTPM: 39.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 81.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 78.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 77.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 77.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 77.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 76.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 71.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 71.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 70.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 67.5
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 65.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 65.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 63.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 62.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 62.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 60.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 60.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 59.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 59.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 59.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 59.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 59.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 59.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 58.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 57.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 57.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 57.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 56.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 56.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 56.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 56.4
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 53.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 52.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 52.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 52.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 52.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 52.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 51.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 51.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 50.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 49.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 49.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 49.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 49.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 48.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 48.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 48.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 48.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 47.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 47.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 47.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 47.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 47.1
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 46.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 46.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 46.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 46.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 46.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 46.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 46.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 46.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 46.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 45.8
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 45.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 45.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 45.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 44.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 44.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 44.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 44.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 43.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 43.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 43.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 43.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 43.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 42.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 42.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 42.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 42.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 42.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 42.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 42.0
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 41.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 41.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 41.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 41.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 41.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 41.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 40.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 40.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 40.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 40.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 40.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 40.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 40.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 40.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 39.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 39.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 39.6
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 39.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 39.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 39.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 39.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 38.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 38.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 38.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 38.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 38.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 38.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 38.2
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 37.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 37.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 37.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 37.7
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 37.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 37.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 37.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 37.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 37.4
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 37.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 37.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 37.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 37.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 37.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 36.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 36.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 36.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 36.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 35.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 35.7
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 35.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 35.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 35.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 35.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 35.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 35.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 34.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 34.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 34.3
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 34.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 34.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 34.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 34.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 34.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 34.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 33.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 33.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 33.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 33.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 33.1
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 32.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 32.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 32.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 32.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 32.1
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 31.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 31.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 31.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 31.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 30.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 30.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 30.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 29.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 29.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 28.5
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 28.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 27.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 27.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 27.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 27.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 27.4
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 27.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 27.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 26.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 26.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 26.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 26.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 25.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 25.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 25.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 25.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 24.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 24.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 24.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 24.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 24.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 24.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 23.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 23.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 23.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 23.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 23.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 22.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 21.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 21.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 21.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 20.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 20.8
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 19.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 19.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 18.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 17.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 16.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 12.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 11.8
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 64.6
FF:10164-103B2 76 years, female 64.6
Nucleus accumbens
Scaled Tags Per Million: 58.7
FF:10037-101F1 23-56 years, mixed 58.7
Putamen
Scaled Tags Per Million: 67.7
FF:10176-103C5 60 years, female 67.7
Globus pallidus
Scaled Tags Per Million: 81.7
FF:10161-103A8 76 years, female 98.3
FF:10175-103C4 60 years, female 65.1

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.8
Pig sample Sample description nTPM
Caudate
nTPM: 61.1
Samples: 4

Max nTPM: 66.8
Min nTPM: 56.3
Sample A Female 61.7
Sample B Female 59.6
Sample C Male 66.8
Sample D Male 56.3
Putamen
nTPM: 75.9
Samples: 4

Max nTPM: 79.6
Min nTPM: 68.6
Sample A Female 79.6
Sample B Female 68.6
Sample C Male 79.0
Sample D Male 76.2
Septum
nTPM: 71.5
Samples: 4

Max nTPM: 81.6
Min nTPM: 62.9
Sample A Female 72.8
Sample B Female 68.7
Sample C Male 81.6
Sample D Male 62.9
Ventral pallidum
nTPM: 72.9
Samples: 4

Max nTPM: 87.5
Min nTPM: 63.7
Sample A Female 63.8
Sample B Female 87.5
Sample C Male 76.4
Sample D Male 63.7

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.0
Samples: 4

Max nTPM: 19.0
Min nTPM: 15.2
Sample A Male 17.8
Sample B Male 15.2
Sample C Female 19.0
Sample D Female 16.0
Septum
nTPM: 15.5
Samples: 4

Max nTPM: 17.5
Min nTPM: 12.9
Sample A Male 17.5
Sample B Male 12.9
Sample C Female 14.1
Sample D Female 17.5
Ventral forebrain
nTPM: 15.6
Samples: 4

Max nTPM: 18.3
Min nTPM: 11.1
Sample A Male 15.9
Sample B Male 17.0
Sample C Female 11.1
Sample D Female 18.3

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.8
68562988 Antisense, RP_050120_02_H05, Mouse strain C57BL/6J (56 days, male) 5.8
Pallidum
Expression energy: 5.4
68562988 Antisense, RP_050120_02_H05, Mouse strain C57BL/6J (56 days, male) 5.4

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