A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.4
nTPM
Monaco:
18.9
nTPM
Schmiedel:
12.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.4
HPA sample
nTPM
Classical monocyte nTPM: 3.2
Samples: 6
Max nTPM: 4.1
Min nTPM: 2.3
P10809_1003
4.1
P10809_1020
3.4
P10809_1039
3.2
P10809_1058
2.5
P10809_1080
3.5
P10809_1107
2.3
Intermediate monocyte nTPM: 3.5
Samples: 6
Max nTPM: 5.6
Min nTPM: 1.0
P10809_1004
4.2
P10809_1023
1.0
P10809_1042
5.6
P10809_1061
3.2
P10809_1081
3.6
P10809_1108
3.1
Non-classical monocyte nTPM: 2.5
Samples: 5
Max nTPM: 5.3
Min nTPM: 0.2
P10809_1005
5.3
P10809_1053
3.1
P10809_1072
0.2
P10809_1082
1.4
P10809_1109
2.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.9
Monaco sample
nTPM
Classical monocyte nTPM: 12.5
Samples: 4
Max nTPM: 16.3
Min nTPM: 5.4
RHH5313_R3680
12.9
RHH5221_R3593
5.4
RHH5250_R3622
16.3
RHH5279_R3651
15.5
Intermediate monocyte nTPM: 10.6
Samples: 4
Max nTPM: 14.0
Min nTPM: 6.3
RHH5314_R3681
6.3
RHH5222_R3594
13.2
RHH5251_R3623
8.8
RHH5280_R3652
14.0
Non-classical monocyte nTPM: 18.9
Samples: 4
Max nTPM: 23.7
Min nTPM: 14.5
RHH5315_R3682
14.5
RHH5223_R3595
21.9
RHH5252_R3624
15.3
RHH5281_R3653
23.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.3
Schmiedel sample id
TPM
Classical monocyte TPM: 8.7
Samples: 91
Max TPM: 13.1
Min TPM: 5.5
MONOCYTES_1
13.1
MONOCYTES_2
12.0
MONOCYTES_3
11.5
MONOCYTES_4
11.4
MONOCYTES_5
11.3
MONOCYTES_6
11.2
MONOCYTES_7
11.1
MONOCYTES_8
11.0
MONOCYTES_9
10.9
MONOCYTES_10
10.8
MONOCYTES_11
10.5
MONOCYTES_12
10.2
MONOCYTES_13
10.2
MONOCYTES_14
10.1
MONOCYTES_15
10.0
MONOCYTES_16
10.0
MONOCYTES_17
9.9
MONOCYTES_18
9.9
MONOCYTES_19
9.8
MONOCYTES_20
9.8
MONOCYTES_21
9.6
MONOCYTES_22
9.6
MONOCYTES_23
9.5
MONOCYTES_24
9.5
MONOCYTES_25
9.4
MONOCYTES_26
9.4
MONOCYTES_27
9.4
MONOCYTES_28
9.4
MONOCYTES_29
9.4
MONOCYTES_30
9.3
MONOCYTES_31
9.3
MONOCYTES_32
9.2
MONOCYTES_33
9.2
MONOCYTES_34
9.2
MONOCYTES_35
9.2
MONOCYTES_36
9.2
MONOCYTES_37
9.0
MONOCYTES_38
9.0
MONOCYTES_39
9.0
MONOCYTES_40
8.9
MONOCYTES_41
8.8
MONOCYTES_42
8.8
MONOCYTES_43
8.8
MONOCYTES_44
8.8
MONOCYTES_45
8.7
MONOCYTES_46
8.6
MONOCYTES_47
8.6
MONOCYTES_48
8.5
MONOCYTES_49
8.5
MONOCYTES_50
8.4
MONOCYTES_51
8.4
MONOCYTES_52
8.3
MONOCYTES_53
8.3
MONOCYTES_54
8.3
MONOCYTES_55
8.2
MONOCYTES_56
8.1
MONOCYTES_57
8.0
MONOCYTES_58
7.9
MONOCYTES_59
7.9
MONOCYTES_60
7.8
MONOCYTES_61
7.8
MONOCYTES_62
7.8
MONOCYTES_63
7.8
MONOCYTES_64
7.7
MONOCYTES_65
7.7
MONOCYTES_66
7.6
MONOCYTES_67
7.5
MONOCYTES_68
7.5
MONOCYTES_69
7.5
MONOCYTES_70
7.5
MONOCYTES_71
7.5
MONOCYTES_72
7.4
MONOCYTES_73
7.4
MONOCYTES_74
7.4
MONOCYTES_75
7.3
MONOCYTES_76
7.3
MONOCYTES_77
7.2
MONOCYTES_78
7.2
MONOCYTES_79
7.2
MONOCYTES_80
7.1
MONOCYTES_81
7.0
MONOCYTES_82
7.0
MONOCYTES_83
6.7
MONOCYTES_84
6.7
MONOCYTES_85
6.5
MONOCYTES_86
6.5
MONOCYTES_87
6.5
MONOCYTES_88
6.3
MONOCYTES_89
6.0
MONOCYTES_90
5.7
MONOCYTES_91
5.5
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Non-classical monocyte TPM: 12.3
Samples: 90
Max TPM: 18.9
Min TPM: 8.1
M2_1
18.9
M2_2
18.8
M2_3
17.7
M2_4
17.6
M2_5
17.3
M2_6
17.0
M2_7
16.8
M2_8
16.8
M2_9
16.7
M2_10
16.1
M2_11
15.9
M2_12
15.9
M2_13
15.2
M2_14
15.2
M2_15
14.9
M2_16
14.6
M2_17
14.5
M2_18
14.5
M2_19
14.2
M2_20
13.6
M2_21
13.5
M2_22
13.4
M2_23
13.2
M2_24
13.2
M2_25
13.2
M2_26
13.0
M2_27
12.8
M2_28
12.7
M2_29
12.6
M2_30
12.5
M2_31
12.5
M2_32
12.5
M2_33
12.5
M2_34
12.4
M2_35
12.4
M2_36
12.3
M2_37
12.3
M2_38
12.3
M2_39
12.2
M2_40
12.1
M2_41
12.1
M2_42
12.1
M2_43
12.1
M2_44
12.0
M2_45
12.0
M2_46
12.0
M2_47
11.9
M2_48
11.8
M2_49
11.8
M2_50
11.7
M2_51
11.6
M2_52
11.4
M2_53
11.4
M2_54
11.4
M2_55
11.3
M2_56
11.3
M2_57
11.3
M2_58
11.2
M2_59
11.1
M2_60
11.1
M2_61
11.1
M2_62
11.1
M2_63
11.0
M2_64
11.0
M2_65
10.9
M2_66
10.8
M2_67
10.8
M2_68
10.8
M2_69
10.6
M2_70
10.5
M2_71
10.3
M2_72
10.3
M2_73
10.3
M2_74
10.2
M2_75
10.1
M2_76
10.1
M2_77
10.1
M2_78
10.1
M2_79
9.8
M2_80
9.7
M2_81
9.7
M2_82
9.6
M2_83
9.5
M2_84
9.5
M2_85
9.0
M2_86
8.9
M2_87
8.5
M2_88
8.2
M2_89
8.2
M2_90
8.1
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