MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.9 nTPM
HPA Brain:65.6 nTPM
GTEx:81.9 nTPM
FANTOM5:117.6 Scaled Tags Per Million
Pig:136.4 nTPM
Mouse:6.0 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 65.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.8
2828 Female, age 72, unknown 73.8
2666 Male, age 74, left hemisphere 57.5
1833 Male, age 53, unknown 47.7
1830 Male, age 51, unknown 45.9
2219 Male, age 76, both hemispheres 44.2
2019 Male, age 18, unknown 42.1
2586 Male, age 75, left hemisphere 41.2
1827 Male, age 72, unknown 33.2
1870 Female, age 42, unknown 31.6
2411 Female, age 72, unknown 30.3
Dorsal raphe nucleus
nTPM: 63.1
2047 Male, age 72, unknown 95.3
1828 Male, age 53, unknown 90.0
2016 Female, age 72, unknown 46.7
2298 Female, age 72, unknown 45.1
2750 Male, age 76, both hemispheres 38.3
Inferior colliculus
nTPM: 48.3
2849 Male, age 72, unknown 81.9
1848 Female, age 42, unknown 48.8
1890 Male, age 53, unknown 34.6
2097 Female, age 72, unknown 27.9
Median raphe nucleus
nTPM: 65.6
2220 Male, age 76, midline 65.6
Periaquaductal grey, anterior
nTPM: 34.3
2502 Female, age 75, unknown 39.0
1795 Male, age 51, unknown 38.8
1947 Male, age 18, unknown 25.1
Periaquaductal grey, dorsal
nTPM: 54.7
2850 Male, age 76, both hemispheres 76.3
2464 Female, age 72, unknown 60.1
1840 Male, age 53, unknown 47.4
1831 Male, age 72, unknown 35.0
Periaquaductal grey, lateral
nTPM: 49.6
2140 Male, age 76, both hemispheres 62.7
2272 Male, age 74, both hemispheres 55.1
2053 Male, age 18, unknown 30.9
Pretectal area
nTPM: 37.5
2825 Male, age 18, unknown 51.0
2273 Male, age 74, both hemispheres 46.7
1817 Female, age 42, unknown 40.2
2224 Female, age 72, unknown 37.4
2407 Male, age 75, both hemispheres 36.7
2007 Male, age 72, unknown 35.7
2667 Female, age 75, unknown 35.1
1815 Male, age 53, unknown 33.6
1944 Female, age 72, unknown 33.4
2316 Male, age 76, right hemisphere 33.0
1816 Male, age 51, unknown 29.2
Red nucleus
nTPM: 51.0
2503 Female, age 72, unknown 62.3
2823 Male, age 76, right hemisphere 59.9
2769 Male, age 72, unknown 58.6
2227 Male, age 72, unknown 57.5
2725 Female, age 75, unknown 56.0
2584 Male, age 75, left hemisphere 52.7
1865 Male, age 51, unknown 49.0
1954 Female, age 42, unknown 49.0
2785 Male, age 18, unknown 46.2
2588 Male, age 74, left hemisphere 42.1
1821 Female, age 72, unknown 40.1
1904 Male, age 53, unknown 39.0
Substantia nigra
nTPM: 47.7
2699 Male, age 18, unknown 96.6
1916 Female, age 42, unknown 56.2
2665 Male, age 74, both hemispheres 54.6
1851 Male, age 51, unknown 48.3
1941 Male, age 53, unknown 47.3
2590 Female, age 75, unknown 44.9
2583 Male, age 75, right hemisphere 39.2
2409 Female, age 72, unknown 35.6
1889 Female, age 72, unknown 33.9
2241 Male, age 72, unknown 20.8
Superior colliculus
nTPM: 36.8
2587 Male, age 74, left hemisphere 44.8
1796 Male, age 53, unknown 43.2
1839 Male, age 51, unknown 41.6
2087 Female, age 72, unknown 40.7
2664 Male, age 75, both hemispheres 40.6
1995 Male, age 72, unknown 39.0
1895 Male, age 76, right hemisphere 33.4
2668 Female, age 75, unknown 29.5
1913 Female, age 42, unknown 27.9
2261 Male, age 18, unknown 27.6
Ventral tegmental area
nTPM: 44.5
2223 Female, age 72, unknown 58.0
1915 Female, age 42, unknown 44.8
2218 Male, age 76, both hemispheres 44.5
2021 Male, age 53, unknown 41.5
2410 Female, age 72, unknown 40.5
1942 Male, age 51, unknown 37.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 81.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.9
Samples: 183

Max nTPM: 271.2
Min nTPM: 12.2
Std nTPM: 42.5
Median nTPM: 74.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 271.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 244.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 210.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 188.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 184.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 180.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 171.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 166.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 157.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 153.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 150.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.6
FF:10158-103A5 76 years, female 117.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 136.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 121.9
Samples: 4

Max nTPM: 149.6
Min nTPM: 105.3
Sample A Female 149.6
Sample B Female 120.9
Sample C Male 111.6
Sample D Male 105.3
Midbrain
nTPM: 134.9
Samples: 4

Max nTPM: 230.4
Min nTPM: 72.9
Sample A Female 230.4
Sample B Female 112.7
Sample C Male 123.5
Sample D Male 72.9
Periaqueductal gray
nTPM: 103.1
Samples: 3

Max nTPM: 107.3
Min nTPM: 99.6
Sample B Female 102.3
Sample C Male 107.3
Sample D Male 99.6
Superior colliculi
nTPM: 136.4
Samples: 4

Max nTPM: 166.5
Min nTPM: 99.6
Sample A Female 166.5
Sample B Female 99.6
Sample C Male 140.1
Sample D Male 139.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 8.6
Min nTPM: 4.3
Sample A Male 8.6
Sample B Male 4.3
Sample C Female 5.4
Sample D Female 5.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74882616 Antisense, RP_060315_04_F07, Mouse strain C57BL/6J (56 days, male) 0.1
69735162 Antisense, RP_050503_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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