A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
25.4
nTPM
Schmiedel:
40.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
HPA sample
nTPM
Classical monocyte nTPM: 3.0
Samples: 6
Max nTPM: 3.4
Min nTPM: 2.8
P10809_1003
2.8
P10809_1020
3.4
P10809_1039
2.9
P10809_1058
2.8
P10809_1080
3.1
P10809_1107
3.3
Intermediate monocyte nTPM: 4.6
Samples: 6
Max nTPM: 7.1
Min nTPM: 0.5
P10809_1004
3.3
P10809_1023
5.8
P10809_1042
7.1
P10809_1061
0.5
P10809_1081
5.0
P10809_1108
5.6
Non-classical monocyte nTPM: 5.1
Samples: 5
Max nTPM: 12.7
Min nTPM: 2.5
P10809_1005
3.1
P10809_1053
2.5
P10809_1072
12.7
P10809_1082
3.4
P10809_1109
3.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
Monaco sample
nTPM
Classical monocyte nTPM: 20.2
Samples: 4
Max nTPM: 24.6
Min nTPM: 17.0
RHH5313_R3680
17.0
RHH5221_R3593
17.7
RHH5250_R3622
24.6
RHH5279_R3651
21.3
Intermediate monocyte nTPM: 25.3
Samples: 4
Max nTPM: 29.6
Min nTPM: 19.9
RHH5314_R3681
19.9
RHH5222_R3594
29.6
RHH5251_R3623
25.6
RHH5280_R3652
26.3
Non-classical monocyte nTPM: 25.1
Samples: 4
Max nTPM: 28.8
Min nTPM: 22.2
RHH5315_R3682
22.2
RHH5223_R3595
26.8
RHH5252_R3624
22.5
RHH5281_R3653
28.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.6
Schmiedel sample id
TPM
Classical monocyte TPM: 26.2
Samples: 91
Max TPM: 36.5
Min TPM: 19.5
MONOCYTES_1
36.5
MONOCYTES_2
36.0
MONOCYTES_3
35.0
MONOCYTES_4
34.3
MONOCYTES_5
33.8
MONOCYTES_6
33.8
MONOCYTES_7
33.2
MONOCYTES_8
33.2
MONOCYTES_9
32.9
MONOCYTES_10
32.3
MONOCYTES_11
31.6
MONOCYTES_12
31.3
MONOCYTES_13
31.2
MONOCYTES_14
31.1
MONOCYTES_15
30.9
MONOCYTES_16
29.9
MONOCYTES_17
29.4
MONOCYTES_18
29.3
MONOCYTES_19
29.2
MONOCYTES_20
28.9
MONOCYTES_21
28.9
MONOCYTES_22
28.6
MONOCYTES_23
28.4
MONOCYTES_24
28.1
MONOCYTES_25
28.0
MONOCYTES_26
27.6
MONOCYTES_27
27.6
MONOCYTES_28
27.5
MONOCYTES_29
27.4
MONOCYTES_30
27.4
MONOCYTES_31
27.3
MONOCYTES_32
27.2
MONOCYTES_33
27.1
MONOCYTES_34
27.1
MONOCYTES_35
27.0
MONOCYTES_36
27.0
MONOCYTES_37
26.9
MONOCYTES_38
26.8
MONOCYTES_39
26.7
MONOCYTES_40
26.6
MONOCYTES_41
26.4
MONOCYTES_42
26.2
MONOCYTES_43
26.1
MONOCYTES_44
26.1
MONOCYTES_45
25.9
MONOCYTES_46
25.7
MONOCYTES_47
25.7
MONOCYTES_48
25.4
MONOCYTES_49
25.3
MONOCYTES_50
25.1
MONOCYTES_51
25.0
MONOCYTES_52
24.9
MONOCYTES_53
24.8
MONOCYTES_54
24.4
MONOCYTES_55
24.4
MONOCYTES_56
24.4
MONOCYTES_57
24.4
MONOCYTES_58
24.4
MONOCYTES_59
24.4
MONOCYTES_60
24.3
MONOCYTES_61
24.3
MONOCYTES_62
24.2
MONOCYTES_63
24.1
MONOCYTES_64
24.0
MONOCYTES_65
23.9
MONOCYTES_66
23.7
MONOCYTES_67
23.7
MONOCYTES_68
23.6
MONOCYTES_69
23.5
MONOCYTES_70
23.5
MONOCYTES_71
23.3
MONOCYTES_72
23.3
MONOCYTES_73
23.1
MONOCYTES_74
22.9
MONOCYTES_75
22.8
MONOCYTES_76
22.8
MONOCYTES_77
22.3
MONOCYTES_78
22.3
MONOCYTES_79
21.9
MONOCYTES_80
21.7
MONOCYTES_81
21.4
MONOCYTES_82
21.4
MONOCYTES_83
21.3
MONOCYTES_84
21.2
MONOCYTES_85
20.8
MONOCYTES_86
20.7
MONOCYTES_87
20.5
MONOCYTES_88
20.2
MONOCYTES_89
19.9
MONOCYTES_90
19.6
MONOCYTES_91
19.5
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Non-classical monocyte TPM: 40.7
Samples: 90
Max TPM: 56.5
Min TPM: 29.3
M2_1
56.5
M2_2
56.1
M2_3
55.2
M2_4
54.0
M2_5
53.4
M2_6
52.7
M2_7
49.9
M2_8
49.9
M2_9
49.8
M2_10
49.7
M2_11
49.6
M2_12
48.4
M2_13
48.0
M2_14
47.9
M2_15
46.8
M2_16
46.6
M2_17
46.3
M2_18
45.9
M2_19
45.5
M2_20
45.3
M2_21
45.3
M2_22
45.3
M2_23
44.1
M2_24
44.0
M2_25
44.0
M2_26
43.0
M2_27
42.9
M2_28
42.6
M2_29
42.4
M2_30
42.4
M2_31
42.0
M2_32
41.9
M2_33
41.3
M2_34
41.3
M2_35
41.1
M2_36
41.0
M2_37
41.0
M2_38
40.7
M2_39
40.7
M2_40
40.4
M2_41
40.2
M2_42
40.1
M2_43
40.1
M2_44
39.7
M2_45
39.6
M2_46
39.3
M2_47
39.2
M2_48
39.2
M2_49
39.2
M2_50
39.1
M2_51
39.1
M2_52
39.1
M2_53
39.0
M2_54
38.7
M2_55
38.7
M2_56
38.7
M2_57
38.6
M2_58
38.6
M2_59
38.4
M2_60
38.4
M2_61
38.1
M2_62
38.0
M2_63
37.9
M2_64
37.7
M2_65
37.2
M2_66
36.5
M2_67
36.4
M2_68
36.4
M2_69
36.1
M2_70
35.9
M2_71
35.6
M2_72
34.9
M2_73
34.7
M2_74
34.7
M2_75
34.7
M2_76
34.5
M2_77
34.3
M2_78
34.0
M2_79
33.8
M2_80
33.7
M2_81
33.1
M2_82
33.0
M2_83
32.5
M2_84
32.1
M2_85
32.0
M2_86
31.9
M2_87
31.8
M2_88
30.4
M2_89
29.5
M2_90
29.3
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