A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.1
nTPM
Monaco:
53.5
nTPM
Schmiedel:
31.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.1
HPA sample
nTPM
Classical monocyte nTPM: 3.2
Samples: 6
Max nTPM: 4.5
Min nTPM: 2.0
P10809_1003
4.4
P10809_1020
3.0
P10809_1039
4.5
P10809_1058
2.9
P10809_1080
2.4
P10809_1107
2.0
Intermediate monocyte nTPM: 7.1
Samples: 6
Max nTPM: 17.1
Min nTPM: 4.0
P10809_1004
5.5
P10809_1023
4.1
P10809_1042
6.6
P10809_1061
17.1
P10809_1081
4.0
P10809_1108
5.6
Non-classical monocyte nTPM: 5.4
Samples: 5
Max nTPM: 7.9
Min nTPM: 1.5
P10809_1005
5.8
P10809_1053
6.5
P10809_1072
7.9
P10809_1082
5.1
P10809_1109
1.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.5
Monaco sample
nTPM
Classical monocyte nTPM: 39.1
Samples: 4
Max nTPM: 46.8
Min nTPM: 35.0
RHH5313_R3680
35.0
RHH5221_R3593
46.8
RHH5250_R3622
38.7
RHH5279_R3651
36.0
Intermediate monocyte nTPM: 42.3
Samples: 4
Max nTPM: 50.7
Min nTPM: 34.7
RHH5314_R3681
34.7
RHH5222_R3594
46.0
RHH5251_R3623
37.9
RHH5280_R3652
50.7
Non-classical monocyte nTPM: 53.5
Samples: 4
Max nTPM: 77.4
Min nTPM: 35.0
RHH5315_R3682
37.1
RHH5223_R3595
64.6
RHH5252_R3624
35.0
RHH5281_R3653
77.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.5
Schmiedel sample id
TPM
Classical monocyte TPM: 21.8
Samples: 91
Max TPM: 27.9
Min TPM: 16.2
MONOCYTES_1
27.9
MONOCYTES_2
27.7
MONOCYTES_3
27.3
MONOCYTES_4
27.1
MONOCYTES_5
26.5
MONOCYTES_6
26.5
MONOCYTES_7
26.2
MONOCYTES_8
26.1
MONOCYTES_9
26.0
MONOCYTES_10
25.6
MONOCYTES_11
25.3
MONOCYTES_12
25.0
MONOCYTES_13
25.0
MONOCYTES_14
24.9
MONOCYTES_15
24.8
MONOCYTES_16
24.7
MONOCYTES_17
24.7
MONOCYTES_18
24.6
MONOCYTES_19
24.6
MONOCYTES_20
24.5
MONOCYTES_21
24.3
MONOCYTES_22
24.3
MONOCYTES_23
24.2
MONOCYTES_24
24.2
MONOCYTES_25
24.1
MONOCYTES_26
24.1
MONOCYTES_27
24.0
MONOCYTES_28
23.9
MONOCYTES_29
23.8
MONOCYTES_30
23.6
MONOCYTES_31
23.6
MONOCYTES_32
23.5
MONOCYTES_33
23.4
MONOCYTES_34
23.4
MONOCYTES_35
23.3
MONOCYTES_36
23.3
MONOCYTES_37
23.1
MONOCYTES_38
22.9
MONOCYTES_39
22.4
MONOCYTES_40
22.3
MONOCYTES_41
22.3
MONOCYTES_42
21.8
MONOCYTES_43
21.7
MONOCYTES_44
21.7
MONOCYTES_45
21.7
MONOCYTES_46
21.5
MONOCYTES_47
21.5
MONOCYTES_48
21.3
MONOCYTES_49
21.0
MONOCYTES_50
20.8
MONOCYTES_51
20.7
MONOCYTES_52
20.7
MONOCYTES_53
20.5
MONOCYTES_54
20.3
MONOCYTES_55
20.3
MONOCYTES_56
20.2
MONOCYTES_57
20.2
MONOCYTES_58
20.2
MONOCYTES_59
20.1
MONOCYTES_60
20.0
MONOCYTES_61
19.7
MONOCYTES_62
19.7
MONOCYTES_63
19.7
MONOCYTES_64
19.7
MONOCYTES_65
19.6
MONOCYTES_66
19.5
MONOCYTES_67
19.5
MONOCYTES_68
19.4
MONOCYTES_69
19.4
MONOCYTES_70
19.3
MONOCYTES_71
19.3
MONOCYTES_72
19.3
MONOCYTES_73
19.1
MONOCYTES_74
19.1
MONOCYTES_75
19.1
MONOCYTES_76
19.0
MONOCYTES_77
19.0
MONOCYTES_78
19.0
MONOCYTES_79
18.8
MONOCYTES_80
18.8
MONOCYTES_81
18.7
MONOCYTES_82
18.6
MONOCYTES_83
18.5
MONOCYTES_84
18.2
MONOCYTES_85
18.1
MONOCYTES_86
18.0
MONOCYTES_87
17.8
MONOCYTES_88
17.5
MONOCYTES_89
16.8
MONOCYTES_90
16.3
MONOCYTES_91
16.2
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Non-classical monocyte TPM: 31.5
Samples: 90
Max TPM: 47.1
Min TPM: 21.3
M2_1
47.1
M2_2
46.9
M2_3
45.1
M2_4
44.6
M2_5
44.4
M2_6
43.6
M2_7
41.6
M2_8
41.1
M2_9
40.8
M2_10
40.5
M2_11
40.2
M2_12
40.1
M2_13
39.8
M2_14
39.2
M2_15
38.2
M2_16
38.0
M2_17
36.4
M2_18
36.3
M2_19
36.3
M2_20
35.4
M2_21
35.2
M2_22
34.6
M2_23
34.5
M2_24
34.3
M2_25
33.9
M2_26
33.1
M2_27
33.0
M2_28
32.9
M2_29
32.7
M2_30
31.9
M2_31
31.9
M2_32
31.7
M2_33
31.7
M2_34
31.4
M2_35
31.3
M2_36
31.3
M2_37
31.3
M2_38
31.2
M2_39
31.2
M2_40
31.2
M2_41
30.9
M2_42
30.4
M2_43
30.3
M2_44
30.2
M2_45
30.1
M2_46
30.0
M2_47
29.9
M2_48
29.7
M2_49
29.7
M2_50
29.7
M2_51
29.6
M2_52
29.4
M2_53
29.3
M2_54
29.0
M2_55
28.9
M2_56
28.7
M2_57
28.7
M2_58
28.7
M2_59
28.5
M2_60
28.3
M2_61
28.3
M2_62
28.1
M2_63
28.1
M2_64
27.8
M2_65
27.7
M2_66
27.4
M2_67
27.4
M2_68
27.4
M2_69
27.4
M2_70
27.3
M2_71
27.2
M2_72
26.9
M2_73
26.7
M2_74
26.7
M2_75
26.4
M2_76
26.3
M2_77
25.6
M2_78
25.5
M2_79
25.5
M2_80
25.3
M2_81
25.0
M2_82
24.8
M2_83
24.5
M2_84
24.3
M2_85
24.3
M2_86
24.1
M2_87
23.8
M2_88
22.5
M2_89
21.5
M2_90
21.3
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