MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:153.6 nTPM
HPA Brain:99.7 nTPM
GTEx:153.6 nTPM
FANTOM5:128.3 Scaled Tags Per Million
Pig:155.7 nTPM
Mouse:511.3 nTPM
Allen mouse:7.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 99.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.0
2019 Male, age 18, unknown 131.3
2411 Female, age 72, unknown 84.7
1827 Male, age 72, unknown 82.3
2586 Male, age 75, left hemisphere 80.4
1870 Female, age 42, unknown 72.0
2828 Female, age 72, unknown 69.6
1833 Male, age 53, unknown 69.1
2219 Male, age 76, both hemispheres 67.6
2666 Male, age 74, left hemisphere 67.2
1830 Male, age 51, unknown 65.8
Dorsal raphe nucleus
nTPM: 80.4
1828 Male, age 53, unknown 100.3
2298 Female, age 72, unknown 94.4
2750 Male, age 76, both hemispheres 72.0
2047 Male, age 72, unknown 70.1
2016 Female, age 72, unknown 65.4
Inferior colliculus
nTPM: 87.1
2097 Female, age 72, unknown 114.5
1890 Male, age 53, unknown 93.9
1848 Female, age 42, unknown 82.8
2849 Male, age 72, unknown 56.9
Median raphe nucleus
nTPM: 59.9
2220 Male, age 76, midline 59.9
Periaquaductal grey, anterior
nTPM: 85.6
2502 Female, age 75, unknown 90.1
1947 Male, age 18, unknown 88.5
1795 Male, age 51, unknown 78.3
Periaquaductal grey, dorsal
nTPM: 58.4
1831 Male, age 72, unknown 63.7
2464 Female, age 72, unknown 62.2
1840 Male, age 53, unknown 55.2
2850 Male, age 76, both hemispheres 52.6
Periaquaductal grey, lateral
nTPM: 66.2
2272 Male, age 74, both hemispheres 85.8
2053 Male, age 18, unknown 61.6
2140 Male, age 76, both hemispheres 51.0
Pretectal area
nTPM: 99.7
1817 Female, age 42, unknown 143.4
2007 Male, age 72, unknown 136.7
1816 Male, age 51, unknown 134.5
1944 Female, age 72, unknown 131.4
2667 Female, age 75, unknown 105.4
1815 Male, age 53, unknown 98.9
2273 Male, age 74, both hemispheres 94.0
2316 Male, age 76, right hemisphere 74.3
2224 Female, age 72, unknown 70.1
2825 Male, age 18, unknown 55.4
2407 Male, age 75, both hemispheres 52.8
Red nucleus
nTPM: 94.6
1821 Female, age 72, unknown 130.3
2785 Male, age 18, unknown 116.5
2503 Female, age 72, unknown 103.5
1865 Male, age 51, unknown 96.7
2725 Female, age 75, unknown 94.4
1954 Female, age 42, unknown 92.9
2769 Male, age 72, unknown 90.7
1904 Male, age 53, unknown 90.0
2227 Male, age 72, unknown 90.0
2823 Male, age 76, right hemisphere 88.6
2588 Male, age 74, left hemisphere 76.2
2584 Male, age 75, left hemisphere 65.4
Substantia nigra
nTPM: 92.6
1889 Female, age 72, unknown 120.0
1916 Female, age 42, unknown 105.8
1851 Male, age 51, unknown 102.1
2409 Female, age 72, unknown 97.7
1941 Male, age 53, unknown 97.3
2241 Male, age 72, unknown 94.9
2665 Male, age 74, both hemispheres 84.2
2590 Female, age 75, unknown 77.8
2699 Male, age 18, unknown 75.2
2583 Male, age 75, right hemisphere 70.8
Superior colliculus
nTPM: 82.6
2087 Female, age 72, unknown 110.3
1895 Male, age 76, right hemisphere 92.3
2587 Male, age 74, left hemisphere 89.2
1995 Male, age 72, unknown 83.0
1796 Male, age 53, unknown 82.9
2261 Male, age 18, unknown 80.5
2668 Female, age 75, unknown 80.3
1913 Female, age 42, unknown 77.9
1839 Male, age 51, unknown 72.3
2664 Male, age 75, both hemispheres 57.2
Ventral tegmental area
nTPM: 77.2
2410 Female, age 72, unknown 108.4
1915 Female, age 42, unknown 84.9
2218 Male, age 76, both hemispheres 82.0
1942 Male, age 51, unknown 65.9
2223 Female, age 72, unknown 64.3
2021 Male, age 53, unknown 57.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 153.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 153.6
Samples: 183

Max nTPM: 256.0
Min nTPM: 76.5
Std nTPM: 34.1
Median nTPM: 150.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 256.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 246.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 244.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 241.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 234.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 221.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 212.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 212.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 209.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 209.2
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 208.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 128.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.3
FF:10158-103A5 76 years, female 128.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 155.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.7
Samples: 4

Max nTPM: 140.6
Min nTPM: 86.3
Sample A Female 140.6
Sample B Female 89.9
Sample C Male 109.9
Sample D Male 86.3
Midbrain
nTPM: 133.1
Samples: 4

Max nTPM: 159.8
Min nTPM: 107.0
Sample A Female 133.7
Sample B Female 107.0
Sample C Male 159.8
Sample D Male 131.8
Periaqueductal gray
nTPM: 88.1
Samples: 3

Max nTPM: 104.3
Min nTPM: 69.2
Sample B Female 104.3
Sample C Male 90.7
Sample D Male 69.2
Superior colliculi
nTPM: 155.7
Samples: 4

Max nTPM: 201.5
Min nTPM: 118.4
Sample A Female 180.5
Sample B Female 118.4
Sample C Male 201.5
Sample D Male 122.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 511.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 511.3
Samples: 4

Max nTPM: 522.0
Min nTPM: 502.3
Sample A Male 522.0
Sample B Male 505.9
Sample C Female 502.3
Sample D Female 514.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
2592 Antisense, RP_040507_01_D05, Mouse strain C57BL/6J (56 days, male) 7.9
2591 Antisense, RP_040507_01_D05, Mouse strain C57BL/6J (56 days, male) 7.7

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