A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
118.7
nTPM
Monaco:
36.3
nTPM
Schmiedel:
25.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.7
HPA sample
nTPM
Classical monocyte nTPM: 114.5
Samples: 6
Max nTPM: 159.5
Min nTPM: 65.6
P10809_1003
65.6
P10809_1020
110.1
P10809_1039
159.5
P10809_1058
95.4
P10809_1080
99.0
P10809_1107
157.5
Intermediate monocyte nTPM: 118.7
Samples: 6
Max nTPM: 178.5
Min nTPM: 63.6
P10809_1004
63.6
P10809_1023
142.9
P10809_1042
128.2
P10809_1061
104.2
P10809_1081
95.0
P10809_1108
178.5
Non-classical monocyte nTPM: 114.7
Samples: 5
Max nTPM: 170.0
Min nTPM: 76.3
P10809_1005
76.3
P10809_1053
122.2
P10809_1072
98.9
P10809_1082
106.3
P10809_1109
170.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.3
Monaco sample
nTPM
Classical monocyte nTPM: 25.8
Samples: 4
Max nTPM: 28.6
Min nTPM: 20.2
RHH5313_R3680
26.2
RHH5221_R3593
20.2
RHH5250_R3622
28.1
RHH5279_R3651
28.6
Intermediate monocyte nTPM: 36.4
Samples: 4
Max nTPM: 49.8
Min nTPM: 27.7
RHH5314_R3681
35.1
RHH5222_R3594
49.8
RHH5251_R3623
32.8
RHH5280_R3652
27.7
Non-classical monocyte nTPM: 27.4
Samples: 4
Max nTPM: 35.0
Min nTPM: 19.4
RHH5315_R3682
35.0
RHH5223_R3595
26.5
RHH5252_R3624
28.5
RHH5281_R3653
19.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.2
Schmiedel sample id
TPM
Classical monocyte TPM: 25.2
Samples: 91
Max TPM: 41.4
Min TPM: 7.9
MONOCYTES_1
41.4
MONOCYTES_2
41.0
MONOCYTES_3
39.3
MONOCYTES_4
37.9
MONOCYTES_5
36.7
MONOCYTES_6
36.7
MONOCYTES_7
36.6
MONOCYTES_8
36.1
MONOCYTES_9
35.8
MONOCYTES_10
35.8
MONOCYTES_11
35.6
MONOCYTES_12
35.3
MONOCYTES_13
35.2
MONOCYTES_14
35.0
MONOCYTES_15
34.5
MONOCYTES_16
34.4
MONOCYTES_17
34.3
MONOCYTES_18
34.3
MONOCYTES_19
34.2
MONOCYTES_20
34.1
MONOCYTES_21
33.8
MONOCYTES_22
33.8
MONOCYTES_23
32.6
MONOCYTES_24
32.5
MONOCYTES_25
32.5
MONOCYTES_26
32.4
MONOCYTES_27
32.3
MONOCYTES_28
31.9
MONOCYTES_29
31.2
MONOCYTES_30
30.8
MONOCYTES_31
30.7
MONOCYTES_32
30.0
MONOCYTES_33
29.9
MONOCYTES_34
29.6
MONOCYTES_35
29.5
MONOCYTES_36
29.1
MONOCYTES_37
29.1
MONOCYTES_38
28.9
MONOCYTES_39
28.3
MONOCYTES_40
28.2
MONOCYTES_41
27.6
MONOCYTES_42
26.7
MONOCYTES_43
26.6
MONOCYTES_44
26.6
MONOCYTES_45
26.3
MONOCYTES_46
25.0
MONOCYTES_47
24.9
MONOCYTES_48
24.1
MONOCYTES_49
23.7
MONOCYTES_50
23.1
MONOCYTES_51
23.1
MONOCYTES_52
22.4
MONOCYTES_53
21.9
MONOCYTES_54
21.4
MONOCYTES_55
21.4
MONOCYTES_56
21.0
MONOCYTES_57
20.9
MONOCYTES_58
20.4
MONOCYTES_59
20.3
MONOCYTES_60
19.9
MONOCYTES_61
19.9
MONOCYTES_62
19.8
MONOCYTES_63
19.6
MONOCYTES_64
19.2
MONOCYTES_65
19.1
MONOCYTES_66
19.0
MONOCYTES_67
18.7
MONOCYTES_68
18.4
MONOCYTES_69
18.2
MONOCYTES_70
18.2
MONOCYTES_71
18.1
MONOCYTES_72
17.9
MONOCYTES_73
17.9
MONOCYTES_74
17.5
MONOCYTES_75
16.5
MONOCYTES_76
15.9
MONOCYTES_77
15.7
MONOCYTES_78
15.4
MONOCYTES_79
15.4
MONOCYTES_80
14.7
MONOCYTES_81
14.5
MONOCYTES_82
13.8
MONOCYTES_83
12.9
MONOCYTES_84
12.3
MONOCYTES_85
12.0
MONOCYTES_86
11.7
MONOCYTES_87
11.0
MONOCYTES_88
10.9
MONOCYTES_89
9.5
MONOCYTES_90
9.1
MONOCYTES_91
7.9
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Non-classical monocyte TPM: 22.3
Samples: 90
Max TPM: 46.1
Min TPM: 3.6
M2_1
46.1
M2_2
42.2
M2_3
41.6
M2_4
39.8
M2_5
39.8
M2_6
38.8
M2_7
36.9
M2_8
35.7
M2_9
34.4
M2_10
34.4
M2_11
33.8
M2_12
33.6
M2_13
31.4
M2_14
31.4
M2_15
30.7
M2_16
30.3
M2_17
29.5
M2_18
29.1
M2_19
28.7
M2_20
28.3
M2_21
28.2
M2_22
27.9
M2_23
27.5
M2_24
27.4
M2_25
26.8
M2_26
26.6
M2_27
25.9
M2_28
25.8
M2_29
25.8
M2_30
25.7
M2_31
25.7
M2_32
25.1
M2_33
25.0
M2_34
24.9
M2_35
24.8
M2_36
24.6
M2_37
24.4
M2_38
24.4
M2_39
24.1
M2_40
23.9
M2_41
23.6
M2_42
22.9
M2_43
22.7
M2_44
22.7
M2_45
22.6
M2_46
22.6
M2_47
22.3
M2_48
22.3
M2_49
22.1
M2_50
21.6
M2_51
21.6
M2_52
21.5
M2_53
21.4
M2_54
21.2
M2_55
21.1
M2_56
20.8
M2_57
20.1
M2_58
20.0
M2_59
19.6
M2_60
19.1
M2_61
18.6
M2_62
18.4
M2_63
17.8
M2_64
17.5
M2_65
17.4
M2_66
16.6
M2_67
15.3
M2_68
15.0
M2_69
14.8
M2_70
14.5
M2_71
13.9
M2_72
13.4
M2_73
12.7
M2_74
12.6
M2_75
12.2
M2_76
12.2
M2_77
11.5
M2_78
11.3
M2_79
11.1
M2_80
11.1
M2_81
10.9
M2_82
9.9
M2_83
9.7
M2_84
8.1
M2_85
7.1
M2_86
6.9
M2_87
6.9
M2_88
5.8
M2_89
5.5
M2_90
3.6
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