A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.9
nTPM
Monaco:
61.5
nTPM
Schmiedel:
51.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.9
HPA sample
nTPM
Classical monocyte nTPM: 10.6
Samples: 6
Max nTPM: 13.3
Min nTPM: 7.9
P10809_1003
11.4
P10809_1020
13.3
P10809_1039
9.6
P10809_1058
7.9
P10809_1080
12.8
P10809_1107
8.8
Intermediate monocyte nTPM: 20.5
Samples: 6
Max nTPM: 27.3
Min nTPM: 14.7
P10809_1004
18.6
P10809_1023
23.9
P10809_1042
18.9
P10809_1061
27.3
P10809_1081
14.7
P10809_1108
19.6
Non-classical monocyte nTPM: 25.9
Samples: 5
Max nTPM: 45.6
Min nTPM: 16.9
P10809_1005
25.3
P10809_1053
21.9
P10809_1072
45.6
P10809_1082
16.9
P10809_1109
19.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.5
Monaco sample
nTPM
Classical monocyte nTPM: 45.3
Samples: 4
Max nTPM: 64.6
Min nTPM: 31.2
RHH5313_R3680
31.2
RHH5221_R3593
64.6
RHH5250_R3622
38.2
RHH5279_R3651
47.3
Intermediate monocyte nTPM: 45.5
Samples: 4
Max nTPM: 58.2
Min nTPM: 36.7
RHH5314_R3681
36.7
RHH5222_R3594
41.7
RHH5251_R3623
45.2
RHH5280_R3652
58.2
Non-classical monocyte nTPM: 61.4
Samples: 4
Max nTPM: 67.3
Min nTPM: 55.0
RHH5315_R3682
57.4
RHH5223_R3595
67.3
RHH5252_R3624
55.0
RHH5281_R3653
66.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.2
Schmiedel sample id
TPM
Classical monocyte TPM: 19.1
Samples: 91
Max TPM: 27.6
Min TPM: 13.0
MONOCYTES_1
27.6
MONOCYTES_2
26.8
MONOCYTES_3
26.3
MONOCYTES_4
25.8
MONOCYTES_5
25.8
MONOCYTES_6
24.5
MONOCYTES_7
24.4
MONOCYTES_8
24.3
MONOCYTES_9
24.1
MONOCYTES_10
23.7
MONOCYTES_11
23.7
MONOCYTES_12
23.3
MONOCYTES_13
23.1
MONOCYTES_14
23.1
MONOCYTES_15
23.1
MONOCYTES_16
22.9
MONOCYTES_17
22.8
MONOCYTES_18
22.6
MONOCYTES_19
22.2
MONOCYTES_20
22.2
MONOCYTES_21
22.0
MONOCYTES_22
21.8
MONOCYTES_23
21.6
MONOCYTES_24
21.3
MONOCYTES_25
21.3
MONOCYTES_26
21.2
MONOCYTES_27
21.1
MONOCYTES_28
21.1
MONOCYTES_29
20.8
MONOCYTES_30
20.8
MONOCYTES_31
20.4
MONOCYTES_32
20.4
MONOCYTES_33
20.3
MONOCYTES_34
19.9
MONOCYTES_35
19.8
MONOCYTES_36
19.7
MONOCYTES_37
19.7
MONOCYTES_38
19.6
MONOCYTES_39
19.5
MONOCYTES_40
19.5
MONOCYTES_41
19.4
MONOCYTES_42
19.4
MONOCYTES_43
19.4
MONOCYTES_44
19.3
MONOCYTES_45
19.0
MONOCYTES_46
18.8
MONOCYTES_47
18.5
MONOCYTES_48
18.5
MONOCYTES_49
18.5
MONOCYTES_50
18.4
MONOCYTES_51
18.3
MONOCYTES_52
18.1
MONOCYTES_53
17.9
MONOCYTES_54
17.7
MONOCYTES_55
17.7
MONOCYTES_56
17.7
MONOCYTES_57
17.6
MONOCYTES_58
17.6
MONOCYTES_59
17.5
MONOCYTES_60
17.4
MONOCYTES_61
17.2
MONOCYTES_62
17.2
MONOCYTES_63
17.1
MONOCYTES_64
17.1
MONOCYTES_65
16.9
MONOCYTES_66
16.7
MONOCYTES_67
16.7
MONOCYTES_68
16.6
MONOCYTES_69
16.6
MONOCYTES_70
16.3
MONOCYTES_71
16.3
MONOCYTES_72
16.1
MONOCYTES_73
16.0
MONOCYTES_74
16.0
MONOCYTES_75
15.5
MONOCYTES_76
15.3
MONOCYTES_77
15.2
MONOCYTES_78
15.2
MONOCYTES_79
15.1
MONOCYTES_80
14.7
MONOCYTES_81
14.5
MONOCYTES_82
14.2
MONOCYTES_83
14.1
MONOCYTES_84
14.1
MONOCYTES_85
13.9
MONOCYTES_86
13.7
MONOCYTES_87
13.7
MONOCYTES_88
13.6
MONOCYTES_89
13.6
MONOCYTES_90
13.2
MONOCYTES_91
13.0
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Non-classical monocyte TPM: 51.2
Samples: 90
Max TPM: 88.8
Min TPM: 32.3
M2_1
88.8
M2_2
86.9
M2_3
81.0
M2_4
76.3
M2_5
75.2
M2_6
74.9
M2_7
73.6
M2_8
69.0
M2_9
68.5
M2_10
68.4
M2_11
65.9
M2_12
65.7
M2_13
63.3
M2_14
61.7
M2_15
61.3
M2_16
60.0
M2_17
59.0
M2_18
58.7
M2_19
58.4
M2_20
58.2
M2_21
57.1
M2_22
56.4
M2_23
55.9
M2_24
55.5
M2_25
55.2
M2_26
55.0
M2_27
54.5
M2_28
54.0
M2_29
54.0
M2_30
53.5
M2_31
53.2
M2_32
53.2
M2_33
52.7
M2_34
52.5
M2_35
52.4
M2_36
51.8
M2_37
51.7
M2_38
51.5
M2_39
51.1
M2_40
50.8
M2_41
50.3
M2_42
50.2
M2_43
49.6
M2_44
49.4
M2_45
49.3
M2_46
48.7
M2_47
48.6
M2_48
48.5
M2_49
48.3
M2_50
48.1
M2_51
47.3
M2_52
46.6
M2_53
46.4
M2_54
46.3
M2_55
46.0
M2_56
45.7
M2_57
45.4
M2_58
45.2
M2_59
45.2
M2_60
45.1
M2_61
44.9
M2_62
44.0
M2_63
44.0
M2_64
43.5
M2_65
42.4
M2_66
42.4
M2_67
42.3
M2_68
41.8
M2_69
41.8
M2_70
41.6
M2_71
41.1
M2_72
41.0
M2_73
40.6
M2_74
40.5
M2_75
40.5
M2_76
40.4
M2_77
40.2
M2_78
40.2
M2_79
40.0
M2_80
39.6
M2_81
39.4
M2_82
39.2
M2_83
38.9
M2_84
38.8
M2_85
38.4
M2_86
37.8
M2_87
37.5
M2_88
36.6
M2_89
35.7
M2_90
32.3
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