A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.3
nTPM
Monaco:
123.7
nTPM
Schmiedel:
79.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.3
HPA sample
nTPM
Classical monocyte nTPM: 5.9
Samples: 6
Max nTPM: 9.3
Min nTPM: 3.1
P10809_1003
9.3
P10809_1020
5.8
P10809_1039
3.1
P10809_1058
4.3
P10809_1080
6.7
P10809_1107
6.3
Intermediate monocyte nTPM: 7.7
Samples: 6
Max nTPM: 10.7
Min nTPM: 4.1
P10809_1004
10.5
P10809_1023
7.5
P10809_1042
10.7
P10809_1061
4.1
P10809_1081
6.7
P10809_1108
6.9
Non-classical monocyte nTPM: 10.2
Samples: 5
Max nTPM: 12.5
Min nTPM: 7.2
P10809_1005
11.1
P10809_1053
9.5
P10809_1072
12.5
P10809_1082
7.2
P10809_1109
10.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.7
Monaco sample
nTPM
Classical monocyte nTPM: 78.5
Samples: 4
Max nTPM: 86.2
Min nTPM: 70.1
RHH5313_R3680
86.2
RHH5221_R3593
79.9
RHH5250_R3622
77.6
RHH5279_R3651
70.1
Intermediate monocyte nTPM: 96.7
Samples: 4
Max nTPM: 116.6
Min nTPM: 87.3
RHH5314_R3681
90.3
RHH5222_R3594
116.6
RHH5251_R3623
87.3
RHH5280_R3652
92.4
Non-classical monocyte nTPM: 123.7
Samples: 4
Max nTPM: 133.2
Min nTPM: 115.6
RHH5315_R3682
124.7
RHH5223_R3595
121.4
RHH5252_R3624
115.6
RHH5281_R3653
133.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.4
Schmiedel sample id
TPM
Classical monocyte TPM: 41.2
Samples: 91
Max TPM: 58.2
Min TPM: 26.0
MONOCYTES_1
58.2
MONOCYTES_2
56.1
MONOCYTES_3
52.6
MONOCYTES_4
52.1
MONOCYTES_5
51.9
MONOCYTES_6
51.5
MONOCYTES_7
51.1
MONOCYTES_8
50.8
MONOCYTES_9
50.1
MONOCYTES_10
49.6
MONOCYTES_11
49.5
MONOCYTES_12
49.1
MONOCYTES_13
48.6
MONOCYTES_14
48.5
MONOCYTES_15
48.5
MONOCYTES_16
48.3
MONOCYTES_17
48.1
MONOCYTES_18
48.0
MONOCYTES_19
47.2
MONOCYTES_20
46.9
MONOCYTES_21
46.7
MONOCYTES_22
46.5
MONOCYTES_23
46.4
MONOCYTES_24
46.2
MONOCYTES_25
46.2
MONOCYTES_26
46.0
MONOCYTES_27
45.8
MONOCYTES_28
45.5
MONOCYTES_29
45.3
MONOCYTES_30
45.0
MONOCYTES_31
44.5
MONOCYTES_32
44.2
MONOCYTES_33
43.9
MONOCYTES_34
43.6
MONOCYTES_35
43.1
MONOCYTES_36
43.1
MONOCYTES_37
42.5
MONOCYTES_38
42.5
MONOCYTES_39
42.4
MONOCYTES_40
42.0
MONOCYTES_41
41.9
MONOCYTES_42
41.9
MONOCYTES_43
41.5
MONOCYTES_44
41.2
MONOCYTES_45
40.8
MONOCYTES_46
40.5
MONOCYTES_47
40.4
MONOCYTES_48
40.3
MONOCYTES_49
39.6
MONOCYTES_50
39.6
MONOCYTES_51
39.3
MONOCYTES_52
39.2
MONOCYTES_53
39.1
MONOCYTES_54
38.5
MONOCYTES_55
38.4
MONOCYTES_56
38.3
MONOCYTES_57
38.2
MONOCYTES_58
38.0
MONOCYTES_59
38.0
MONOCYTES_60
38.0
MONOCYTES_61
38.0
MONOCYTES_62
37.8
MONOCYTES_63
37.5
MONOCYTES_64
37.4
MONOCYTES_65
37.3
MONOCYTES_66
36.7
MONOCYTES_67
36.6
MONOCYTES_68
36.2
MONOCYTES_69
36.1
MONOCYTES_70
36.0
MONOCYTES_71
35.9
MONOCYTES_72
35.8
MONOCYTES_73
35.7
MONOCYTES_74
35.6
MONOCYTES_75
35.5
MONOCYTES_76
35.2
MONOCYTES_77
34.9
MONOCYTES_78
34.7
MONOCYTES_79
34.1
MONOCYTES_80
34.0
MONOCYTES_81
33.7
MONOCYTES_82
33.4
MONOCYTES_83
33.3
MONOCYTES_84
32.9
MONOCYTES_85
32.7
MONOCYTES_86
30.6
MONOCYTES_87
30.4
MONOCYTES_88
30.0
MONOCYTES_89
29.8
MONOCYTES_90
29.0
MONOCYTES_91
26.0
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Non-classical monocyte TPM: 79.4
Samples: 90
Max TPM: 111.3
Min TPM: 39.6
M2_1
111.3
M2_2
107.7
M2_3
106.6
M2_4
104.3
M2_5
104.2
M2_6
102.0
M2_7
99.3
M2_8
99.2
M2_9
97.9
M2_10
97.6
M2_11
95.7
M2_12
95.5
M2_13
94.6
M2_14
94.1
M2_15
93.0
M2_16
92.8
M2_17
92.0
M2_18
92.0
M2_19
91.3
M2_20
91.0
M2_21
90.8
M2_22
90.3
M2_23
90.2
M2_24
89.7
M2_25
89.6
M2_26
89.5
M2_27
89.1
M2_28
89.1
M2_29
88.8
M2_30
88.7
M2_31
88.7
M2_32
88.2
M2_33
87.8
M2_34
87.2
M2_35
85.6
M2_36
85.2
M2_37
83.8
M2_38
83.5
M2_39
83.4
M2_40
83.3
M2_41
82.4
M2_42
81.9
M2_43
81.8
M2_44
81.6
M2_45
81.3
M2_46
81.0
M2_47
79.9
M2_48
79.5
M2_49
78.7
M2_50
78.5
M2_51
78.4
M2_52
77.8
M2_53
77.7
M2_54
77.5
M2_55
77.2
M2_56
77.0
M2_57
76.7
M2_58
74.6
M2_59
73.7
M2_60
73.4
M2_61
71.8
M2_62
71.2
M2_63
70.9
M2_64
70.8
M2_65
69.7
M2_66
69.3
M2_67
68.6
M2_68
68.3
M2_69
68.1
M2_70
67.9
M2_71
67.7
M2_72
66.6
M2_73
66.3
M2_74
64.9
M2_75
64.7
M2_76
63.1
M2_77
63.0
M2_78
62.2
M2_79
61.8
M2_80
59.3
M2_81
57.9
M2_82
56.7
M2_83
56.5
M2_84
56.4
M2_85
56.3
M2_86
53.1
M2_87
49.0
M2_88
48.1
M2_89
48.0
M2_90
39.6
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