A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.3
nTPM
Monaco:
2.0
nTPM
Schmiedel:
18.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
HPA sample
nTPM
Classical monocyte nTPM: 0.0
Samples: 6
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.2
P10809_1039
0.0
P10809_1058
0.0
P10809_1080
0.0
P10809_1107
0.0
Intermediate monocyte nTPM: 0.3
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1004
0.4
P10809_1023
0.5
P10809_1042
0.0
P10809_1061
0.4
P10809_1081
0.6
P10809_1108
0.0
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.0
Monaco sample
nTPM
Classical monocyte nTPM: 2.0
Samples: 4
Max nTPM: 3.4
Min nTPM: 0.0
RHH5313_R3680
0.0
RHH5221_R3593
2.4
RHH5250_R3622
3.4
RHH5279_R3651
2.3
Intermediate monocyte nTPM: 0.8
Samples: 4
Max nTPM: 3.2
Min nTPM: 0.0
RHH5314_R3681
0.0
RHH5222_R3594
3.2
RHH5251_R3623
0.0
RHH5280_R3652
0.1
Non-classical monocyte nTPM: 0.4
Samples: 4
Max nTPM: 1.1
Min nTPM: 0.0
RHH5315_R3682
0.4
RHH5223_R3595
0.0
RHH5252_R3624
1.1
RHH5281_R3653
0.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.1
Schmiedel sample id
TPM
Classical monocyte TPM: 10.5
Samples: 91
Max TPM: 17.3
Min TPM: 5.7
MONOCYTES_1
17.3
MONOCYTES_2
17.2
MONOCYTES_3
16.7
MONOCYTES_4
15.2
MONOCYTES_5
15.0
MONOCYTES_6
14.7
MONOCYTES_7
14.7
MONOCYTES_8
14.3
MONOCYTES_9
14.2
MONOCYTES_10
13.9
MONOCYTES_11
13.9
MONOCYTES_12
13.9
MONOCYTES_13
13.8
MONOCYTES_14
13.7
MONOCYTES_15
13.6
MONOCYTES_16
13.3
MONOCYTES_17
13.3
MONOCYTES_18
13.1
MONOCYTES_19
13.0
MONOCYTES_20
13.0
MONOCYTES_21
13.0
MONOCYTES_22
12.4
MONOCYTES_23
12.3
MONOCYTES_24
11.8
MONOCYTES_25
11.7
MONOCYTES_26
11.7
MONOCYTES_27
11.7
MONOCYTES_28
11.6
MONOCYTES_29
11.6
MONOCYTES_30
11.6
MONOCYTES_31
11.5
MONOCYTES_32
11.5
MONOCYTES_33
11.4
MONOCYTES_34
11.2
MONOCYTES_35
11.2
MONOCYTES_36
11.1
MONOCYTES_37
10.9
MONOCYTES_38
10.7
MONOCYTES_39
10.7
MONOCYTES_40
10.7
MONOCYTES_41
10.6
MONOCYTES_42
10.4
MONOCYTES_43
10.4
MONOCYTES_44
10.4
MONOCYTES_45
10.3
MONOCYTES_46
10.2
MONOCYTES_47
10.2
MONOCYTES_48
10.2
MONOCYTES_49
10.1
MONOCYTES_50
10.0
MONOCYTES_51
10.0
MONOCYTES_52
9.9
MONOCYTES_53
9.8
MONOCYTES_54
9.8
MONOCYTES_55
9.8
MONOCYTES_56
9.8
MONOCYTES_57
9.7
MONOCYTES_58
9.7
MONOCYTES_59
9.5
MONOCYTES_60
9.5
MONOCYTES_61
9.4
MONOCYTES_62
9.3
MONOCYTES_63
9.1
MONOCYTES_64
9.0
MONOCYTES_65
8.8
MONOCYTES_66
8.6
MONOCYTES_67
8.6
MONOCYTES_68
8.5
MONOCYTES_69
8.5
MONOCYTES_70
8.4
MONOCYTES_71
8.3
MONOCYTES_72
8.2
MONOCYTES_73
8.2
MONOCYTES_74
8.2
MONOCYTES_75
8.2
MONOCYTES_76
7.9
MONOCYTES_77
7.9
MONOCYTES_78
7.8
MONOCYTES_79
7.7
MONOCYTES_80
7.7
MONOCYTES_81
7.6
MONOCYTES_82
7.6
MONOCYTES_83
7.3
MONOCYTES_84
6.6
MONOCYTES_85
6.6
MONOCYTES_86
6.4
MONOCYTES_87
6.1
MONOCYTES_88
6.0
MONOCYTES_89
6.0
MONOCYTES_90
5.8
MONOCYTES_91
5.7
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Non-classical monocyte TPM: 18.1
Samples: 90
Max TPM: 32.1
Min TPM: 9.6
M2_1
32.1
M2_2
28.0
M2_3
26.6
M2_4
25.1
M2_5
24.6
M2_6
24.3
M2_7
23.6
M2_8
23.4
M2_9
23.2
M2_10
23.1
M2_11
23.0
M2_12
23.0
M2_13
22.8
M2_14
22.8
M2_15
22.8
M2_16
22.7
M2_17
22.5
M2_18
22.4
M2_19
22.3
M2_20
22.1
M2_21
21.4
M2_22
21.1
M2_23
20.9
M2_24
20.9
M2_25
20.5
M2_26
20.5
M2_27
20.4
M2_28
20.1
M2_29
19.9
M2_30
19.8
M2_31
19.7
M2_32
19.7
M2_33
19.5
M2_34
19.2
M2_35
18.8
M2_36
18.8
M2_37
18.8
M2_38
18.7
M2_39
18.6
M2_40
18.0
M2_41
17.9
M2_42
17.9
M2_43
17.8
M2_44
17.8
M2_45
17.8
M2_46
17.5
M2_47
17.3
M2_48
17.3
M2_49
17.3
M2_50
17.2
M2_51
17.0
M2_52
17.0
M2_53
16.8
M2_54
16.7
M2_55
16.6
M2_56
16.6
M2_57
16.5
M2_58
16.5
M2_59
16.2
M2_60
16.0
M2_61
15.9
M2_62
15.8
M2_63
15.7
M2_64
15.3
M2_65
15.3
M2_66
15.3
M2_67
15.0
M2_68
14.7
M2_69
14.6
M2_70
14.5
M2_71
14.4
M2_72
14.2
M2_73
14.0
M2_74
14.0
M2_75
13.9
M2_76
13.7
M2_77
13.7
M2_78
13.7
M2_79
13.5
M2_80
13.3
M2_81
13.3
M2_82
13.2
M2_83
13.1
M2_84
13.0
M2_85
12.4
M2_86
11.6
M2_87
11.2
M2_88
10.3
M2_89
10.0
M2_90
9.6
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