HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:95.3 nTPM
HPA Brain:89.6 nTPM
GTEx:95.3 nTPM
FANTOM5:220.3 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:41.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024662Antibody HPA025244
Glial cells LowNot detected
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 89.6
Sample id Sample description nTPM
Hippocampus
nTPM: 82.7
2148 Female, age 91, left hemisphere 99.9
1911 Female, age 85, right hemisphere 92.1
2621 Female, age 67, right hemisphere 89.7
1855 Male, age 76, left hemisphere 76.5
2529 Female, age 94, left hemisphere 72.0
1898 Male, age 80, left hemisphere 65.7
Dentate gyrus
nTPM: 76.1
1927 Female, age 91, both hemispheres 99.5
2531 Female, age 67, both hemispheres 85.6
2246 Female, age 85, both hemispheres 77.9
2530 Female, age 94, left hemisphere 68.4
2528 Male, age 74, both hemispheres 68.0
2010 Male, age 76, both hemispheres 57.2
Entorhinal gyrus
nTPM: 85.3
2613 Female, age 94, left hemisphere 115.7
2686 Male, age 75, right hemisphere 103.9
2764 Male, age 80, right hemisphere 83.8
1938 Female, age 85, left hemisphere 75.7
1787 Male, age 76, left hemisphere 74.2
2117 Female, age 91, right hemisphere 58.4
Hippocampus, CA1
nTPM: 85.9
2749 Male, age 80, left hemisphere 107.7
2082 Female, age 91, right hemisphere 89.8
2527 Male, age 74, both hemispheres 85.1
2045 Male, age 76, both hemispheres 74.8
1873 Female, age 85, both hemispheres 72.0
Hippocampus, CA2
nTPM: 78.4
2113 Female, age 91, right hemisphere 87.6
1892 Male, age 76, both hemispheres 85.4
2437 Female, age 94, left hemisphere 82.7
2249 Male, age 74, both hemispheres 74.6
1963 Male, age 80, left hemisphere 71.6
1940 Female, age 85, left hemisphere 68.8
Hippocampus, CA3
nTPM: 89.6
2137 Male, age 80, left hemisphere 121.2
2861 Female, age 67, both hemispheres 108.4
2620 Female, age 94, left hemisphere 98.4
1867 Male, age 76, both hemispheres 81.7
2436 Male, age 74, both hemispheres 66.4
1891 Female, age 85, both hemispheres 61.3
Parahippocampal cortex
nTPM: 85.5
2622 Female, age 67, right hemisphere 121.4
2245 Female, age 91, both hemispheres 109.4
2692 Male, age 74, both hemispheres 90.8
2693 Female, age 94, both hemispheres 89.2
2250 Female, age 67, right hemisphere 82.6
2532 Female, age 72, left hemisphere 78.5
1933 Female, age 85, both hemispheres 73.9
1990 Female, age 91, right hemisphere 70.9
1850 Male, age 80, both hemispheres 69.7
2018 Male, age 76, both hemispheres 69.0
Perirhinal gyrus
nTPM: 79.7
2521 Female, age 94, right hemisphere 85.3
1794 Male, age 80, right hemisphere 79.6
2848 Male, age 76, right hemisphere 79.5
1847 Female, age 91, left hemisphere 78.3
1841 Female, age 85, right hemisphere 75.9
Subiculum
nTPM: 74.1
2619 Male, age 74, both hemispheres 82.4
2438 Female, age 94, left hemisphere 77.0
2729 Female, age 91, right hemisphere 75.1
2042 Male, age 76, both hemispheres 74.5
1901 Male, age 80, both hemispheres 71.8
1977 Female, age 85, both hemispheres 64.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 95.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 95.3
Samples: 255

Max nTPM: 479.5
Min nTPM: 11.5
Std nTPM: 48.0
Median nTPM: 88.7
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 479.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 277.9
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 267.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 258.1
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 229.2
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 217.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 187.1
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 185.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 176.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 175.8
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 172.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 220.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 220.3
FF:10153-102I9 76 years, female 243.4
FF:10169-103B7 60 years, female 197.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 25.3
Pig sample Sample description nTPM
Subiculum
nTPM: 22.1
Samples: 4

Max nTPM: 29.6
Min nTPM: 16.3
Sample A Female 29.6
Sample B Female 21.1
Sample C Male 21.5
Sample D Male 16.3
Dorsal hippocampus
nTPM: 25.3
Samples: 4

Max nTPM: 30.9
Min nTPM: 20.7
Sample A Female 30.9
Sample B Female 27.3
Sample C Male 22.2
Sample D Male 20.7
Entorhinal cortex
nTPM: 21.9
Samples: 4

Max nTPM: 22.7
Min nTPM: 20.0
Sample A Female 22.3
Sample B Female 20.0
Sample C Male 22.7
Sample D Male 22.6
Ventral hippocampus
nTPM: 23.7
Samples: 4

Max nTPM: 30.8
Min nTPM: 19.2
Sample A Female 19.2
Sample B Female 19.5
Sample C Male 25.3
Sample D Male 30.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 41.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 41.4
Samples: 4

Max nTPM: 48.6
Min nTPM: 31.9
Sample A Male 44.5
Sample B Male 48.6
Sample C Female 40.7
Sample D Female 31.9
Hippocampal formation
nTPM: 29.6
Samples: 4

Max nTPM: 35.7
Min nTPM: 21.5
Sample A Male 35.7
Sample B Male 30.7
Sample C Female 21.5
Sample D Female 30.5

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