MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.0 nTPM
HPA Brain:48.9 nTPM
GTEx:41.0 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:29.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
2828 Female, age 72, unknown 49.9
2586 Male, age 75, left hemisphere 49.3
2219 Male, age 76, both hemispheres 49.0
2019 Male, age 18, unknown 46.6
1827 Male, age 72, unknown 41.3
2666 Male, age 74, left hemisphere 39.7
1833 Male, age 53, unknown 34.7
2411 Female, age 72, unknown 33.1
1830 Male, age 51, unknown 29.7
1870 Female, age 42, unknown 28.6
Dorsal raphe nucleus
nTPM: 33.7
2298 Female, age 72, unknown 42.3
2047 Male, age 72, unknown 36.1
1828 Male, age 53, unknown 32.6
2016 Female, age 72, unknown 31.8
2750 Male, age 76, both hemispheres 25.9
Inferior colliculus
nTPM: 42.2
1848 Female, age 42, unknown 43.8
2849 Male, age 72, unknown 43.6
1890 Male, age 53, unknown 42.0
2097 Female, age 72, unknown 39.5
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 42.3
2502 Female, age 75, unknown 47.2
1795 Male, age 51, unknown 44.7
1947 Male, age 18, unknown 34.9
Periaquaductal grey, dorsal
nTPM: 43.2
1840 Male, age 53, unknown 52.6
2464 Female, age 72, unknown 45.9
2850 Male, age 76, both hemispheres 38.3
1831 Male, age 72, unknown 36.0
Periaquaductal grey, lateral
nTPM: 39.5
2140 Male, age 76, both hemispheres 46.3
2053 Male, age 18, unknown 36.7
2272 Male, age 74, both hemispheres 35.3
Pretectal area
nTPM: 48.9
1816 Male, age 51, unknown 62.8
1944 Female, age 72, unknown 62.2
2667 Female, age 75, unknown 61.1
1815 Male, age 53, unknown 53.4
2007 Male, age 72, unknown 53.2
1817 Female, age 42, unknown 49.9
2224 Female, age 72, unknown 42.3
2273 Male, age 74, both hemispheres 39.9
2407 Male, age 75, both hemispheres 39.8
2316 Male, age 76, right hemisphere 37.6
2825 Male, age 18, unknown 36.2
Red nucleus
nTPM: 31.7
2588 Male, age 74, left hemisphere 44.8
2785 Male, age 18, unknown 43.5
1954 Female, age 42, unknown 32.1
2227 Male, age 72, unknown 32.0
2769 Male, age 72, unknown 31.3
2584 Male, age 75, left hemisphere 30.6
2725 Female, age 75, unknown 29.7
2503 Female, age 72, unknown 28.6
2823 Male, age 76, right hemisphere 28.3
1865 Male, age 51, unknown 28.2
1904 Male, age 53, unknown 27.1
1821 Female, age 72, unknown 24.1
Substantia nigra
nTPM: 43.0
2665 Male, age 74, both hemispheres 61.1
1916 Female, age 42, unknown 53.6
2241 Male, age 72, unknown 49.0
1851 Male, age 51, unknown 45.2
1889 Female, age 72, unknown 43.9
1941 Male, age 53, unknown 38.7
2590 Female, age 75, unknown 38.7
2699 Male, age 18, unknown 38.6
2409 Female, age 72, unknown 34.2
2583 Male, age 75, right hemisphere 26.9
Superior colliculus
nTPM: 43.3
2087 Female, age 72, unknown 67.1
2664 Male, age 75, both hemispheres 55.0
1796 Male, age 53, unknown 48.3
2261 Male, age 18, unknown 47.1
1895 Male, age 76, right hemisphere 44.9
1839 Male, age 51, unknown 39.2
2587 Male, age 74, left hemisphere 37.8
2668 Female, age 75, unknown 33.3
1995 Male, age 72, unknown 31.9
1913 Female, age 42, unknown 28.5
Ventral tegmental area
nTPM: 38.1
1915 Female, age 42, unknown 42.3
2410 Female, age 72, unknown 41.3
1942 Male, age 51, unknown 39.7
2218 Male, age 76, both hemispheres 39.6
2021 Male, age 53, unknown 34.9
2223 Female, age 72, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.0
Samples: 183

Max nTPM: 118.7
Min nTPM: 4.8
Std nTPM: 21.7
Median nTPM: 38.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 118.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 112.2
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 95.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 93.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 92.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 88.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 85.6
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 81.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 80.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 80.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 77.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.6
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.5
Sample A Female 6.1
Sample B Female 4.6
Sample C Male 7.1
Sample D Male 4.5
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 14.7
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 6.3
Sample C Male 13.6
Sample D Male 14.7
Periaqueductal gray
nTPM: 9.0
Samples: 3

Max nTPM: 10.8
Min nTPM: 8.1
Sample B Female 8.2
Sample C Male 10.8
Sample D Male 8.1
Superior colliculi
nTPM: 9.6
Samples: 4

Max nTPM: 11.2
Min nTPM: 7.2
Sample A Female 8.8
Sample B Female 7.2
Sample C Male 11.2
Sample D Male 11.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 28.7
Sample A Male 32.3
Sample B Male 29.2
Sample C Female 28.7
Sample D Female 28.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo