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TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:10.4 nTPM
HPA Brain:24.6 nTPM
GTEx:10.4 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:1.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.4
2411 Female, age 72, unknown 24.8
2586 Male, age 75, left hemisphere 24.7
2019 Male, age 18, unknown 23.8
1870 Female, age 42, unknown 22.4
1833 Male, age 53, unknown 22.1
1830 Male, age 51, unknown 20.8
2666 Male, age 74, left hemisphere 19.5
2828 Female, age 72, unknown 19.2
1827 Male, age 72, unknown 18.8
2219 Male, age 76, both hemispheres 17.6
Dorsal raphe nucleus
nTPM: 21.6
2016 Female, age 72, unknown 24.0
2298 Female, age 72, unknown 21.9
2047 Male, age 72, unknown 21.2
2750 Male, age 76, both hemispheres 21.1
1828 Male, age 53, unknown 19.8
Inferior colliculus
nTPM: 24.2
2097 Female, age 72, unknown 27.0
1848 Female, age 42, unknown 24.5
1890 Male, age 53, unknown 23.8
2849 Male, age 72, unknown 21.4
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Periaquaductal grey, anterior
nTPM: 24.6
2502 Female, age 75, unknown 28.5
1947 Male, age 18, unknown 24.6
1795 Male, age 51, unknown 20.7
Periaquaductal grey, dorsal
nTPM: 21.1
2464 Female, age 72, unknown 23.6
1831 Male, age 72, unknown 21.4
1840 Male, age 53, unknown 21.4
2850 Male, age 76, both hemispheres 18.1
Periaquaductal grey, lateral
nTPM: 19.4
2053 Male, age 18, unknown 20.4
2272 Male, age 74, both hemispheres 20.3
2140 Male, age 76, both hemispheres 17.5
Pretectal area
nTPM: 21.3
1944 Female, age 72, unknown 24.8
1815 Male, age 53, unknown 24.2
2273 Male, age 74, both hemispheres 22.0
2825 Male, age 18, unknown 21.8
1816 Male, age 51, unknown 21.7
2667 Female, age 75, unknown 21.6
2316 Male, age 76, right hemisphere 21.1
2007 Male, age 72, unknown 21.0
1817 Female, age 42, unknown 20.1
2224 Female, age 72, unknown 19.7
2407 Male, age 75, both hemispheres 16.3
Red nucleus
nTPM: 23.4
1865 Male, age 51, unknown 26.7
2503 Female, age 72, unknown 26.2
1821 Female, age 72, unknown 25.8
1904 Male, age 53, unknown 24.4
2227 Male, age 72, unknown 23.7
1954 Female, age 42, unknown 23.4
2769 Male, age 72, unknown 23.3
2823 Male, age 76, right hemisphere 23.3
2785 Male, age 18, unknown 22.6
2584 Male, age 75, left hemisphere 22.3
2588 Male, age 74, left hemisphere 20.3
2725 Female, age 75, unknown 19.3
Substantia nigra
nTPM: 22.9
2241 Male, age 72, unknown 28.2
1941 Male, age 53, unknown 24.2
1851 Male, age 51, unknown 24.0
2409 Female, age 72, unknown 24.0
1916 Female, age 42, unknown 23.4
1889 Female, age 72, unknown 22.7
2583 Male, age 75, right hemisphere 22.5
2590 Female, age 75, unknown 20.8
2665 Male, age 74, both hemispheres 19.7
2699 Male, age 18, unknown 19.4
Superior colliculus
nTPM: 22.9
2668 Female, age 75, unknown 25.3
2664 Male, age 75, both hemispheres 24.6
1895 Male, age 76, right hemisphere 24.5
1913 Female, age 42, unknown 23.4
1995 Male, age 72, unknown 23.3
2087 Female, age 72, unknown 22.9
2261 Male, age 18, unknown 22.6
1796 Male, age 53, unknown 22.3
2587 Male, age 74, left hemisphere 20.9
1839 Male, age 51, unknown 18.9
Ventral tegmental area
nTPM: 21.2
2410 Female, age 72, unknown 25.0
1942 Male, age 51, unknown 24.5
1915 Female, age 42, unknown 22.1
2223 Female, age 72, unknown 21.2
2021 Male, age 53, unknown 17.6
2218 Male, age 76, both hemispheres 16.6

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.4
Samples: 139

Max nTPM: 24.8
Min nTPM: 3.0
Std nTPM: 3.8
Median nTPM: 9.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 23.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 22.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 21.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 19.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 19.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 17.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 16.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 16.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 16.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 16.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 15.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 15.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 15.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 15.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 14.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 14.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 14.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 14.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 13.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 13.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 13.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 13.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 13.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 13.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 12.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 12.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 12.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 12.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 12.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 12.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 11.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 11.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 11.6
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 11.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 11.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 11.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 11.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 11.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 11.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 11.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 11.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 11.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 11.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 11.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 10.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 10.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 10.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 10.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 10.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 10.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 10.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 10.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 10.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 10.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 10.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 10.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 10.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 10.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 10.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 10.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 9.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 9.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 9.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 9.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 9.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 9.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 9.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 9.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 9.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 9.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 9.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 9.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 9.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 9.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 9.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 9.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 9.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 9.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 9.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 9.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 9.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 9.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 9.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 9.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 9.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 8.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 8.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 8.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 8.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 8.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 8.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 8.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 8.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 8.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 8.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 8.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 8.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 8.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 7.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 7.7
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 7.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 7.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 7.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 7.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 7.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 7.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 7.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 7.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 6.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 6.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 6.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 6.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 6.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 6.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 6.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 6.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 6.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 6.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 6.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 6.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 5.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 5.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 5.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 5.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 5.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 5.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 5.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 4.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 4.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 4.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 3.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.6
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.7
Sample A Female 7.8
Sample B Female 6.7
Sample C Male 7.9
Sample D Male 8.1
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 7.9
Sample C Male 7.9
Sample D Male 10.4
Periaqueductal gray
nTPM: 7.7
Samples: 3

Max nTPM: 8.2
Min nTPM: 7.2
Sample B Female 7.2
Sample C Male 7.6
Sample D Male 8.2
Superior colliculi
nTPM: 7.5
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.7
Sample A Female 7.7
Sample B Female 6.7
Sample C Male 7.8
Sample D Male 7.9

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.9
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.1
Sample A Male 1.9
Sample B Male 2.1
Sample C Female 2.3
Sample D Female 1.1

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71283662 Antisense, RP_050825_01_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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