MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA Brain:24.6 nTPM
GTEx:10.4 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:1.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.4
2411 Female, age 72, unknown 24.8
2586 Male, age 75, left hemisphere 24.7
2019 Male, age 18, unknown 23.8
1870 Female, age 42, unknown 22.4
1833 Male, age 53, unknown 22.1
1830 Male, age 51, unknown 20.8
2666 Male, age 74, left hemisphere 19.5
2828 Female, age 72, unknown 19.2
1827 Male, age 72, unknown 18.8
2219 Male, age 76, both hemispheres 17.6
Dorsal raphe nucleus
nTPM: 21.6
2016 Female, age 72, unknown 24.0
2298 Female, age 72, unknown 21.9
2047 Male, age 72, unknown 21.2
2750 Male, age 76, both hemispheres 21.1
1828 Male, age 53, unknown 19.8
Inferior colliculus
nTPM: 24.2
2097 Female, age 72, unknown 27.0
1848 Female, age 42, unknown 24.5
1890 Male, age 53, unknown 23.8
2849 Male, age 72, unknown 21.4
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Periaquaductal grey, anterior
nTPM: 24.6
2502 Female, age 75, unknown 28.5
1947 Male, age 18, unknown 24.6
1795 Male, age 51, unknown 20.7
Periaquaductal grey, dorsal
nTPM: 21.1
2464 Female, age 72, unknown 23.6
1831 Male, age 72, unknown 21.4
1840 Male, age 53, unknown 21.4
2850 Male, age 76, both hemispheres 18.1
Periaquaductal grey, lateral
nTPM: 19.4
2053 Male, age 18, unknown 20.4
2272 Male, age 74, both hemispheres 20.3
2140 Male, age 76, both hemispheres 17.5
Pretectal area
nTPM: 21.3
1944 Female, age 72, unknown 24.8
1815 Male, age 53, unknown 24.2
2273 Male, age 74, both hemispheres 22.0
2825 Male, age 18, unknown 21.8
1816 Male, age 51, unknown 21.7
2667 Female, age 75, unknown 21.6
2316 Male, age 76, right hemisphere 21.1
2007 Male, age 72, unknown 21.0
1817 Female, age 42, unknown 20.1
2224 Female, age 72, unknown 19.7
2407 Male, age 75, both hemispheres 16.3
Red nucleus
nTPM: 23.4
1865 Male, age 51, unknown 26.7
2503 Female, age 72, unknown 26.2
1821 Female, age 72, unknown 25.8
1904 Male, age 53, unknown 24.4
2227 Male, age 72, unknown 23.7
1954 Female, age 42, unknown 23.4
2769 Male, age 72, unknown 23.3
2823 Male, age 76, right hemisphere 23.3
2785 Male, age 18, unknown 22.6
2584 Male, age 75, left hemisphere 22.3
2588 Male, age 74, left hemisphere 20.3
2725 Female, age 75, unknown 19.3
Substantia nigra
nTPM: 22.9
2241 Male, age 72, unknown 28.2
1941 Male, age 53, unknown 24.2
1851 Male, age 51, unknown 24.0
2409 Female, age 72, unknown 24.0
1916 Female, age 42, unknown 23.4
1889 Female, age 72, unknown 22.7
2583 Male, age 75, right hemisphere 22.5
2590 Female, age 75, unknown 20.8
2665 Male, age 74, both hemispheres 19.7
2699 Male, age 18, unknown 19.4
Superior colliculus
nTPM: 22.9
2668 Female, age 75, unknown 25.3
2664 Male, age 75, both hemispheres 24.6
1895 Male, age 76, right hemisphere 24.5
1913 Female, age 42, unknown 23.4
1995 Male, age 72, unknown 23.3
2087 Female, age 72, unknown 22.9
2261 Male, age 18, unknown 22.6
1796 Male, age 53, unknown 22.3
2587 Male, age 74, left hemisphere 20.9
1839 Male, age 51, unknown 18.9
Ventral tegmental area
nTPM: 21.2
2410 Female, age 72, unknown 25.0
1942 Male, age 51, unknown 24.5
1915 Female, age 42, unknown 22.1
2223 Female, age 72, unknown 21.2
2021 Male, age 53, unknown 17.6
2218 Male, age 76, both hemispheres 16.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.4
Samples: 139

Max nTPM: 24.8
Min nTPM: 3.0
Std nTPM: 3.8
Median nTPM: 9.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 23.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 22.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 21.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 19.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 19.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 17.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 16.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 16.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.6
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.7
Sample A Female 7.8
Sample B Female 6.7
Sample C Male 7.9
Sample D Male 8.1
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 7.9
Sample C Male 7.9
Sample D Male 10.4
Periaqueductal gray
nTPM: 7.7
Samples: 3

Max nTPM: 8.2
Min nTPM: 7.2
Sample B Female 7.2
Sample C Male 7.6
Sample D Male 8.2
Superior colliculi
nTPM: 7.5
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.7
Sample A Female 7.7
Sample B Female 6.7
Sample C Male 7.8
Sample D Male 7.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.9
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.1
Sample A Male 1.9
Sample B Male 2.1
Sample C Female 2.3
Sample D Female 1.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71283662 Antisense, RP_050825_01_C08, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org