A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.2
nTPM
Monaco:
32.8
nTPM
Schmiedel:
63.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.2
HPA sample
nTPM
Memory B-cell nTPM: 4.4
Samples: 6
Max nTPM: 10.8
Min nTPM: 2.2
P10809_1017
2.6
P10809_1025
2.2
P10809_1044
10.8
P10809_1063
3.0
P10809_1092
3.4
P10809_1105
4.2
Naive B-cell nTPM: 8.2
Samples: 6
Max nTPM: 13.5
Min nTPM: 0.9
P10809_1011
13.5
P10809_1029
9.1
P10809_1048
0.9
P10809_1067
8.4
P10809_1091
7.9
P10809_1104
9.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 7.4
Samples: 4
Max nTPM: 11.2
Min nTPM: 3.9
RHH5310_R3677
3.9
RHH5218_R3590
11.2
RHH5247_R3619
7.3
RHH5276_R3648
7.4
Naive B-cell nTPM: 32.8
Samples: 4
Max nTPM: 41.8
Min nTPM: 23.6
RHH5308_R3675
28.4
RHH5216_R3588
23.6
RHH5245_R3617
41.8
RHH5274_R3646
37.4
Non-switched memory B-cell nTPM: 18.4
Samples: 4
Max nTPM: 20.0
Min nTPM: 17.1
RHH5309_R3676
20.0
RHH5217_R3589
17.1
RHH5246_R3618
19.1
RHH5275_R3647
17.2
Plasmablast nTPM: 0.2
Samples: 4
Max nTPM: 0.8
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.0
RHH5249_R3621
0.8
RHH5278_R3650
0.0
Switched memory B-cell nTPM: 5.7
Samples: 4
Max nTPM: 11.4
Min nTPM: 0.2
RHH5311_R3678
4.8
RHH5219_R3591
6.4
RHH5248_R3620
0.2
RHH5277_R3649
11.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.1
Schmiedel sample id
TPM
Naive B-cell TPM: 63.1
Samples: 91
Max TPM: 82.7
Min TPM: 40.5
B_CELL_NAIVE_1
82.7
B_CELL_NAIVE_2
82.3
B_CELL_NAIVE_3
81.2
B_CELL_NAIVE_4
78.8
B_CELL_NAIVE_5
77.6
B_CELL_NAIVE_6
77.5
B_CELL_NAIVE_7
75.0
B_CELL_NAIVE_8
74.1
B_CELL_NAIVE_9
73.2
B_CELL_NAIVE_10
73.1
B_CELL_NAIVE_11
72.4
B_CELL_NAIVE_12
72.3
B_CELL_NAIVE_13
72.1
B_CELL_NAIVE_14
71.7
B_CELL_NAIVE_15
71.1
B_CELL_NAIVE_16
71.0
B_CELL_NAIVE_17
70.9
B_CELL_NAIVE_18
70.8
B_CELL_NAIVE_19
70.3
B_CELL_NAIVE_20
70.2
B_CELL_NAIVE_21
69.7
B_CELL_NAIVE_22
69.6
B_CELL_NAIVE_23
69.5
B_CELL_NAIVE_24
69.1
B_CELL_NAIVE_25
69.1
B_CELL_NAIVE_26
68.4
B_CELL_NAIVE_27
68.3
B_CELL_NAIVE_28
67.8
B_CELL_NAIVE_29
67.4
B_CELL_NAIVE_30
67.0
B_CELL_NAIVE_31
65.8
B_CELL_NAIVE_32
65.1
B_CELL_NAIVE_33
65.0
B_CELL_NAIVE_34
64.7
B_CELL_NAIVE_35
64.3
B_CELL_NAIVE_36
64.2
B_CELL_NAIVE_37
64.1
B_CELL_NAIVE_38
63.7
B_CELL_NAIVE_39
63.7
B_CELL_NAIVE_40
63.6
B_CELL_NAIVE_41
63.4
B_CELL_NAIVE_42
63.4
B_CELL_NAIVE_43
63.2
B_CELL_NAIVE_44
63.1
B_CELL_NAIVE_45
62.6
B_CELL_NAIVE_46
62.6
B_CELL_NAIVE_47
62.0
B_CELL_NAIVE_48
62.0
B_CELL_NAIVE_49
62.0
B_CELL_NAIVE_50
61.2
B_CELL_NAIVE_51
61.2
B_CELL_NAIVE_52
61.2
B_CELL_NAIVE_53
60.7
B_CELL_NAIVE_54
60.6
B_CELL_NAIVE_55
60.6
B_CELL_NAIVE_56
59.9
B_CELL_NAIVE_57
59.9
B_CELL_NAIVE_58
59.8
B_CELL_NAIVE_59
59.8
B_CELL_NAIVE_60
59.8
B_CELL_NAIVE_61
59.6
B_CELL_NAIVE_62
59.5
B_CELL_NAIVE_63
59.4
B_CELL_NAIVE_64
59.2
B_CELL_NAIVE_65
59.1
B_CELL_NAIVE_66
59.1
B_CELL_NAIVE_67
59.0
B_CELL_NAIVE_68
58.8
B_CELL_NAIVE_69
58.7
B_CELL_NAIVE_70
58.4
B_CELL_NAIVE_71
58.1
B_CELL_NAIVE_72
57.8
B_CELL_NAIVE_73
57.4
B_CELL_NAIVE_74
57.2
B_CELL_NAIVE_75
57.1
B_CELL_NAIVE_76
56.9
B_CELL_NAIVE_77
55.8
B_CELL_NAIVE_78
55.1
B_CELL_NAIVE_79
54.8
B_CELL_NAIVE_80
54.5
B_CELL_NAIVE_81
52.7
B_CELL_NAIVE_82
52.2
B_CELL_NAIVE_83
51.7
B_CELL_NAIVE_84
51.0
B_CELL_NAIVE_85
49.5
B_CELL_NAIVE_86
49.1
B_CELL_NAIVE_87
47.8
B_CELL_NAIVE_88
47.6
B_CELL_NAIVE_89
46.6
B_CELL_NAIVE_90
46.5
B_CELL_NAIVE_91
40.5
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