MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.0 nTPM
HPA Brain:34.9 nTPM
GTEx:12.0 nTPM
FANTOM5:88.8 Scaled Tags Per Million
Pig:52.2 nTPM
Mouse:18.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.6
2219 Male, age 76, both hemispheres 40.9
1833 Male, age 53, unknown 35.2
1830 Male, age 51, unknown 34.1
2666 Male, age 74, left hemisphere 33.0
1870 Female, age 42, unknown 32.5
1827 Male, age 72, unknown 31.4
2019 Male, age 18, unknown 29.2
2828 Female, age 72, unknown 29.0
2411 Female, age 72, unknown 26.8
2586 Male, age 75, left hemisphere 24.4
Dorsal raphe nucleus
nTPM: 26.2
1828 Male, age 53, unknown 28.0
2750 Male, age 76, both hemispheres 28.0
2016 Female, age 72, unknown 27.3
2047 Male, age 72, unknown 26.0
2298 Female, age 72, unknown 21.6
Inferior colliculus
nTPM: 34.9
2849 Male, age 72, unknown 43.7
1848 Female, age 42, unknown 33.9
1890 Male, age 53, unknown 32.0
2097 Female, age 72, unknown 30.1
Median raphe nucleus
nTPM: 31.2
2220 Male, age 76, midline 31.2
Periaquaductal grey, anterior
nTPM: 26.6
1947 Male, age 18, unknown 29.1
2502 Female, age 75, unknown 27.1
1795 Male, age 51, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 32.2
2850 Male, age 76, both hemispheres 38.4
1831 Male, age 72, unknown 31.0
2464 Female, age 72, unknown 31.0
1840 Male, age 53, unknown 28.4
Periaquaductal grey, lateral
nTPM: 27.7
2140 Male, age 76, both hemispheres 33.7
2053 Male, age 18, unknown 26.4
2272 Male, age 74, both hemispheres 22.9
Pretectal area
nTPM: 29.7
2316 Male, age 76, right hemisphere 34.1
2407 Male, age 75, both hemispheres 33.2
1815 Male, age 53, unknown 32.6
2007 Male, age 72, unknown 31.3
2825 Male, age 18, unknown 30.4
1817 Female, age 42, unknown 30.1
1816 Male, age 51, unknown 29.4
2224 Female, age 72, unknown 29.1
1944 Female, age 72, unknown 27.8
2667 Female, age 75, unknown 26.0
2273 Male, age 74, both hemispheres 22.5
Red nucleus
nTPM: 33.6
2503 Female, age 72, unknown 38.7
2725 Female, age 75, unknown 36.1
1954 Female, age 42, unknown 34.7
2823 Male, age 76, right hemisphere 34.3
1821 Female, age 72, unknown 34.1
1865 Male, age 51, unknown 33.9
1904 Male, age 53, unknown 33.7
2584 Male, age 75, left hemisphere 33.7
2588 Male, age 74, left hemisphere 32.5
2769 Male, age 72, unknown 31.6
2227 Male, age 72, unknown 30.6
2785 Male, age 18, unknown 29.2
Substantia nigra
nTPM: 28.3
2699 Male, age 18, unknown 35.6
2665 Male, age 74, both hemispheres 33.9
2590 Female, age 75, unknown 28.9
1941 Male, age 53, unknown 28.6
1889 Female, age 72, unknown 27.0
2583 Male, age 75, right hemisphere 26.8
2241 Male, age 72, unknown 26.4
1851 Male, age 51, unknown 26.1
1916 Female, age 42, unknown 25.2
2409 Female, age 72, unknown 24.7
Superior colliculus
nTPM: 30.7
1895 Male, age 76, right hemisphere 36.8
1913 Female, age 42, unknown 35.4
1839 Male, age 51, unknown 34.0
2668 Female, age 75, unknown 30.7
1796 Male, age 53, unknown 29.7
1995 Male, age 72, unknown 29.1
2664 Male, age 75, both hemispheres 28.8
2587 Male, age 74, left hemisphere 28.0
2261 Male, age 18, unknown 27.3
2087 Female, age 72, unknown 26.9
Ventral tegmental area
nTPM: 28.5
2223 Female, age 72, unknown 32.4
2218 Male, age 76, both hemispheres 31.7
1942 Male, age 51, unknown 27.9
2410 Female, age 72, unknown 27.1
2021 Male, age 53, unknown 26.1
1915 Female, age 42, unknown 26.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.0
Samples: 139

Max nTPM: 29.0
Min nTPM: 4.3
Std nTPM: 3.8
Median nTPM: 11.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 29.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 22.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 22.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 21.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 20.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 20.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 19.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 18.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 18.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 17.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 88.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.8
FF:10158-103A5 76 years, female 88.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.4
Samples: 4

Max nTPM: 59.1
Min nTPM: 45.6
Sample A Female 45.6
Sample B Female 50.7
Sample C Male 50.1
Sample D Male 59.1
Midbrain
nTPM: 52.3
Samples: 4

Max nTPM: 57.7
Min nTPM: 48.4
Sample A Female 57.7
Sample B Female 52.8
Sample C Male 50.1
Sample D Male 48.4
Periaqueductal gray
nTPM: 47.3
Samples: 3

Max nTPM: 47.4
Min nTPM: 47.3
Sample B Female 47.3
Sample C Male 47.3
Sample D Male 47.4
Superior colliculi
nTPM: 50.2
Samples: 4

Max nTPM: 53.5
Min nTPM: 44.6
Sample A Female 49.2
Sample B Female 44.6
Sample C Male 53.5
Sample D Male 53.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.2
Sample A Male 17.2
Sample B Male 19.1
Sample C Female 20.4
Sample D Female 17.2

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