HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:263.5 nTPM
HPA Brain:294.0 nTPM
GTEx:263.5 nTPM
FANTOM5:385.1 Scaled Tags Per Million
Pig:182.0 nTPM
Mouse:18.3 nTPM
Allen mouse:2.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051960
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 294.0
Sample id Sample description nTPM
Hippocampus
nTPM: 239.4
1898 Male, age 80, left hemisphere 318.6
1855 Male, age 76, left hemisphere 283.0
2621 Female, age 67, right hemisphere 252.2
2148 Female, age 91, left hemisphere 222.6
2529 Female, age 94, left hemisphere 186.0
1911 Female, age 85, right hemisphere 173.9
Dentate gyrus
nTPM: 257.9
1927 Female, age 91, both hemispheres 294.9
2530 Female, age 94, left hemisphere 292.1
2010 Male, age 76, both hemispheres 270.1
2246 Female, age 85, both hemispheres 241.8
2531 Female, age 67, both hemispheres 235.6
2528 Male, age 74, both hemispheres 213.0
Entorhinal gyrus
nTPM: 216.0
2613 Female, age 94, left hemisphere 285.0
2764 Male, age 80, right hemisphere 257.1
1938 Female, age 85, left hemisphere 220.0
1787 Male, age 76, left hemisphere 193.2
2686 Male, age 75, right hemisphere 172.2
2117 Female, age 91, right hemisphere 168.7
Hippocampus, CA1
nTPM: 294.0
2749 Male, age 80, left hemisphere 452.3
2045 Male, age 76, both hemispheres 273.8
1873 Female, age 85, both hemispheres 257.0
2527 Male, age 74, both hemispheres 245.3
2082 Female, age 91, right hemisphere 241.6
Hippocampus, CA2
nTPM: 241.2
1963 Male, age 80, left hemisphere 319.0
1892 Male, age 76, both hemispheres 292.8
2113 Female, age 91, right hemisphere 217.5
1940 Female, age 85, left hemisphere 210.6
2437 Female, age 94, left hemisphere 206.4
2249 Male, age 74, both hemispheres 200.8
Hippocampus, CA3
nTPM: 273.0
2137 Male, age 80, left hemisphere 373.4
2620 Female, age 94, left hemisphere 321.3
2861 Female, age 67, both hemispheres 272.8
1867 Male, age 76, both hemispheres 248.5
2436 Male, age 74, both hemispheres 247.0
1891 Female, age 85, both hemispheres 175.1
Parahippocampal cortex
nTPM: 211.7
1850 Male, age 80, both hemispheres 253.3
2245 Female, age 91, both hemispheres 252.0
1933 Female, age 85, both hemispheres 221.5
2693 Female, age 94, both hemispheres 217.8
2250 Female, age 67, right hemisphere 217.5
1990 Female, age 91, right hemisphere 205.5
2532 Female, age 72, left hemisphere 205.0
2018 Male, age 76, both hemispheres 203.4
2622 Female, age 67, right hemisphere 185.1
2692 Male, age 74, both hemispheres 155.6
Perirhinal gyrus
nTPM: 273.0
1847 Female, age 91, left hemisphere 331.1
1794 Male, age 80, right hemisphere 303.6
2521 Female, age 94, right hemisphere 268.0
1841 Female, age 85, right hemisphere 243.7
2848 Male, age 76, right hemisphere 218.5
Subiculum
nTPM: 186.0
1901 Male, age 80, both hemispheres 232.8
1977 Female, age 85, both hemispheres 222.9
2729 Female, age 91, right hemisphere 173.5
2042 Male, age 76, both hemispheres 170.5
2619 Male, age 74, both hemispheres 167.5
2438 Female, age 94, left hemisphere 148.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 263.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 263.5
Samples: 255

Max nTPM: 681.5
Min nTPM: 57.9
Std nTPM: 113.3
Median nTPM: 254.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 681.5
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 609.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 597.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 596.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 565.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 558.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 537.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 537.2
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 531.0
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 524.0
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 517.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 385.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 385.1
FF:10169-103B7 60 years, female 590.9
FF:10153-102I9 76 years, female 179.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 182.0
Pig sample Sample description nTPM
Subiculum
nTPM: 163.6
Samples: 4

Max nTPM: 207.6
Min nTPM: 135.5
Sample A Female 207.6
Sample B Female 139.4
Sample C Male 172.0
Sample D Male 135.5
Dorsal hippocampus
nTPM: 160.0
Samples: 4

Max nTPM: 209.7
Min nTPM: 128.2
Sample A Female 209.7
Sample B Female 173.3
Sample C Male 128.8
Sample D Male 128.2
Entorhinal cortex
nTPM: 123.0
Samples: 4

Max nTPM: 143.5
Min nTPM: 99.8
Sample A Female 138.8
Sample B Female 99.8
Sample C Male 143.5
Sample D Male 109.8
Ventral hippocampus
nTPM: 182.0
Samples: 4

Max nTPM: 253.4
Min nTPM: 111.0
Sample A Female 193.7
Sample B Female 111.0
Sample C Male 253.4
Sample D Male 170.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 18.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 17.5
Samples: 4

Max nTPM: 23.3
Min nTPM: 14.1
Sample A Male 16.8
Sample B Male 15.6
Sample C Female 14.1
Sample D Female 23.3
Hippocampal formation
nTPM: 18.3
Samples: 4

Max nTPM: 19.5
Min nTPM: 15.2
Sample A Male 19.1
Sample B Male 19.5
Sample C Female 15.2
Sample D Female 19.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
68301682 Antisense, RP_041130_01_F06, Mouse strain C57BL/6J (56 days, male) 5.6
70194606 Antisense, RP_050517_01_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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