A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
66.1
nTPM
Monaco:
87.2
nTPM
Schmiedel:
37.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.1
HPA sample
nTPM
Classical monocyte nTPM: 62.9
Samples: 6
Max nTPM: 99.8
Min nTPM: 43.8
P10809_1003
46.6
P10809_1020
76.5
P10809_1039
99.8
P10809_1058
49.3
P10809_1080
43.8
P10809_1107
61.4
Intermediate monocyte nTPM: 66.1
Samples: 6
Max nTPM: 85.0
Min nTPM: 46.0
P10809_1004
49.4
P10809_1023
74.7
P10809_1042
73.9
P10809_1061
85.0
P10809_1081
46.0
P10809_1108
67.7
Non-classical monocyte nTPM: 35.3
Samples: 5
Max nTPM: 44.1
Min nTPM: 29.8
P10809_1005
37.7
P10809_1053
33.7
P10809_1072
44.1
P10809_1082
29.8
P10809_1109
31.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.2
Monaco sample
nTPM
Classical monocyte nTPM: 87.3
Samples: 4
Max nTPM: 95.2
Min nTPM: 78.4
RHH5313_R3680
85.7
RHH5221_R3593
89.7
RHH5250_R3622
95.2
RHH5279_R3651
78.4
Intermediate monocyte nTPM: 60.8
Samples: 4
Max nTPM: 82.1
Min nTPM: 46.5
RHH5314_R3681
46.5
RHH5222_R3594
54.8
RHH5251_R3623
59.9
RHH5280_R3652
82.1
Non-classical monocyte nTPM: 49.7
Samples: 4
Max nTPM: 53.1
Min nTPM: 46.6
RHH5315_R3682
53.1
RHH5223_R3595
46.6
RHH5252_R3624
52.5
RHH5281_R3653
46.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.7
Schmiedel sample id
TPM
Classical monocyte TPM: 37.7
Samples: 91
Max TPM: 61.3
Min TPM: 21.0
MONOCYTES_1
61.3
MONOCYTES_2
61.0
MONOCYTES_3
59.6
MONOCYTES_4
55.6
MONOCYTES_5
55.6
MONOCYTES_6
54.3
MONOCYTES_7
51.4
MONOCYTES_8
50.6
MONOCYTES_9
50.3
MONOCYTES_10
49.4
MONOCYTES_11
49.2
MONOCYTES_12
48.9
MONOCYTES_13
48.3
MONOCYTES_14
47.1
MONOCYTES_15
46.9
MONOCYTES_16
46.8
MONOCYTES_17
45.8
MONOCYTES_18
45.5
MONOCYTES_19
44.5
MONOCYTES_20
44.3
MONOCYTES_21
44.3
MONOCYTES_22
43.9
MONOCYTES_23
43.7
MONOCYTES_24
43.2
MONOCYTES_25
43.1
MONOCYTES_26
42.8
MONOCYTES_27
42.0
MONOCYTES_28
41.8
MONOCYTES_29
41.6
MONOCYTES_30
41.2
MONOCYTES_31
41.2
MONOCYTES_32
41.1
MONOCYTES_33
40.2
MONOCYTES_34
40.1
MONOCYTES_35
40.1
MONOCYTES_36
40.0
MONOCYTES_37
39.6
MONOCYTES_38
39.5
MONOCYTES_39
39.0
MONOCYTES_40
38.7
MONOCYTES_41
38.7
MONOCYTES_42
38.5
MONOCYTES_43
38.2
MONOCYTES_44
38.2
MONOCYTES_45
37.5
MONOCYTES_46
37.2
MONOCYTES_47
36.8
MONOCYTES_48
36.8
MONOCYTES_49
36.7
MONOCYTES_50
36.6
MONOCYTES_51
36.5
MONOCYTES_52
36.5
MONOCYTES_53
36.3
MONOCYTES_54
36.0
MONOCYTES_55
35.9
MONOCYTES_56
35.9
MONOCYTES_57
35.6
MONOCYTES_58
35.4
MONOCYTES_59
35.3
MONOCYTES_60
34.7
MONOCYTES_61
34.1
MONOCYTES_62
33.7
MONOCYTES_63
33.5
MONOCYTES_64
32.6
MONOCYTES_65
32.0
MONOCYTES_66
31.8
MONOCYTES_67
31.7
MONOCYTES_68
30.7
MONOCYTES_69
29.9
MONOCYTES_70
29.8
MONOCYTES_71
29.5
MONOCYTES_72
29.0
MONOCYTES_73
28.9
MONOCYTES_74
28.6
MONOCYTES_75
28.1
MONOCYTES_76
27.5
MONOCYTES_77
27.3
MONOCYTES_78
27.0
MONOCYTES_79
26.9
MONOCYTES_80
26.5
MONOCYTES_81
26.3
MONOCYTES_82
25.8
MONOCYTES_83
25.7
MONOCYTES_84
24.8
MONOCYTES_85
24.2
MONOCYTES_86
22.9
MONOCYTES_87
21.5
MONOCYTES_88
21.4
MONOCYTES_89
21.3
MONOCYTES_90
21.2
MONOCYTES_91
21.0
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Non-classical monocyte TPM: 22.5
Samples: 90
Max TPM: 38.5
Min TPM: 8.0
M2_1
38.5
M2_2
38.1
M2_3
36.2
M2_4
36.0
M2_5
35.6
M2_6
35.0
M2_7
32.6
M2_8
32.2
M2_9
31.5
M2_10
31.2
M2_11
30.8
M2_12
30.0
M2_13
29.9
M2_14
29.7
M2_15
29.1
M2_16
29.0
M2_17
28.8
M2_18
28.3
M2_19
28.3
M2_20
27.3
M2_21
27.3
M2_22
27.2
M2_23
26.9
M2_24
26.8
M2_25
26.7
M2_26
26.5
M2_27
26.3
M2_28
26.1
M2_29
26.0
M2_30
26.0
M2_31
25.8
M2_32
25.0
M2_33
25.0
M2_34
24.8
M2_35
24.7
M2_36
24.5
M2_37
23.8
M2_38
23.6
M2_39
23.4
M2_40
23.2
M2_41
23.0
M2_42
23.0
M2_43
23.0
M2_44
22.5
M2_45
22.4
M2_46
21.8
M2_47
21.6
M2_48
21.6
M2_49
21.4
M2_50
21.4
M2_51
21.0
M2_52
20.8
M2_53
20.7
M2_54
20.5
M2_55
20.4
M2_56
20.4
M2_57
20.3
M2_58
20.2
M2_59
19.2
M2_60
19.2
M2_61
19.1
M2_62
19.1
M2_63
19.0
M2_64
18.9
M2_65
18.5
M2_66
18.0
M2_67
17.8
M2_68
17.7
M2_69
17.6
M2_70
17.5
M2_71
17.2
M2_72
16.7
M2_73
16.5
M2_74
16.2
M2_75
15.8
M2_76
15.5
M2_77
15.4
M2_78
15.1
M2_79
13.8
M2_80
13.4
M2_81
13.2
M2_82
13.1
M2_83
12.6
M2_84
12.6
M2_85
12.5
M2_86
12.4
M2_87
12.0
M2_88
11.8
M2_89
10.3
M2_90
8.0
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