A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
122.4
nTPM
Monaco:
625.9
nTPM
Schmiedel:
1008.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.4
HPA sample
nTPM
Classical monocyte nTPM: 24.4
Samples: 6
Max nTPM: 53.7
Min nTPM: 10.5
P10809_1003
53.7
P10809_1020
26.6
P10809_1039
10.5
P10809_1058
17.6
P10809_1080
19.3
P10809_1107
18.6
Intermediate monocyte nTPM: 47.9
Samples: 6
Max nTPM: 90.0
Min nTPM: 26.9
P10809_1004
90.0
P10809_1023
43.9
P10809_1042
62.7
P10809_1061
34.7
P10809_1081
26.9
P10809_1108
29.3
Non-classical monocyte nTPM: 122.4
Samples: 5
Max nTPM: 298.9
Min nTPM: 41.5
P10809_1005
124.4
P10809_1053
91.3
P10809_1072
298.9
P10809_1082
41.5
P10809_1109
55.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
625.9
Monaco sample
nTPM
Classical monocyte nTPM: 196.5
Samples: 4
Max nTPM: 252.3
Min nTPM: 135.4
RHH5313_R3680
236.0
RHH5221_R3593
252.3
RHH5250_R3622
135.4
RHH5279_R3651
162.1
Intermediate monocyte nTPM: 473.5
Samples: 4
Max nTPM: 697.1
Min nTPM: 354.5
RHH5314_R3681
409.1
RHH5222_R3594
697.1
RHH5251_R3623
433.2
RHH5280_R3652
354.5
Non-classical monocyte nTPM: 625.9
Samples: 4
Max nTPM: 758.6
Min nTPM: 522.4
RHH5315_R3682
683.6
RHH5223_R3595
758.6
RHH5252_R3624
522.4
RHH5281_R3653
539.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1008.2
Schmiedel sample id
TPM
Classical monocyte TPM: 270.1
Samples: 91
Max TPM: 449.1
Min TPM: 162.3
MONOCYTES_1
449.1
MONOCYTES_2
378.3
MONOCYTES_3
373.7
MONOCYTES_4
369.9
MONOCYTES_5
368.8
MONOCYTES_6
365.6
MONOCYTES_7
358.9
MONOCYTES_8
358.4
MONOCYTES_9
353.4
MONOCYTES_10
353.3
MONOCYTES_11
352.9
MONOCYTES_12
352.2
MONOCYTES_13
346.7
MONOCYTES_14
330.2
MONOCYTES_15
328.8
MONOCYTES_16
327.2
MONOCYTES_17
327.2
MONOCYTES_18
327.2
MONOCYTES_19
326.4
MONOCYTES_20
325.1
MONOCYTES_21
325.0
MONOCYTES_22
312.1
MONOCYTES_23
308.0
MONOCYTES_24
306.5
MONOCYTES_25
304.7
MONOCYTES_26
303.9
MONOCYTES_27
303.2
MONOCYTES_28
301.3
MONOCYTES_29
301.2
MONOCYTES_30
301.0
MONOCYTES_31
301.0
MONOCYTES_32
298.1
MONOCYTES_33
293.2
MONOCYTES_34
293.2
MONOCYTES_35
291.8
MONOCYTES_36
287.8
MONOCYTES_37
285.9
MONOCYTES_38
284.8
MONOCYTES_39
284.0
MONOCYTES_40
283.2
MONOCYTES_41
282.4
MONOCYTES_42
281.8
MONOCYTES_43
280.8
MONOCYTES_44
280.4
MONOCYTES_45
276.4
MONOCYTES_46
276.0
MONOCYTES_47
270.3
MONOCYTES_48
267.4
MONOCYTES_49
266.3
MONOCYTES_50
264.4
MONOCYTES_51
262.9
MONOCYTES_52
258.4
MONOCYTES_53
258.4
MONOCYTES_54
257.7
MONOCYTES_55
254.6
MONOCYTES_56
253.1
MONOCYTES_57
246.5
MONOCYTES_58
241.9
MONOCYTES_59
241.7
MONOCYTES_60
238.5
MONOCYTES_61
234.6
MONOCYTES_62
234.5
MONOCYTES_63
233.5
MONOCYTES_64
233.2
MONOCYTES_65
229.3
MONOCYTES_66
228.7
MONOCYTES_67
224.6
MONOCYTES_68
223.3
MONOCYTES_69
218.3
MONOCYTES_70
217.3
MONOCYTES_71
208.7
MONOCYTES_72
207.7
MONOCYTES_73
207.0
MONOCYTES_74
206.7
MONOCYTES_75
202.5
MONOCYTES_76
197.4
MONOCYTES_77
197.2
MONOCYTES_78
195.0
MONOCYTES_79
194.8
MONOCYTES_80
194.2
MONOCYTES_81
190.8
MONOCYTES_82
190.2
MONOCYTES_83
189.9
MONOCYTES_84
188.4
MONOCYTES_85
185.6
MONOCYTES_86
183.3
MONOCYTES_87
181.6
MONOCYTES_88
178.3
MONOCYTES_89
171.6
MONOCYTES_90
169.3
MONOCYTES_91
162.3
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Non-classical monocyte TPM: 1008.2
Samples: 90
Max TPM: 1431.3
Min TPM: 546.4
M2_1
1431.3
M2_2
1424.3
M2_3
1332.6
M2_4
1322.3
M2_5
1298.6
M2_6
1286.4
M2_7
1284.9
M2_8
1252.3
M2_9
1252.0
M2_10
1249.4
M2_11
1215.1
M2_12
1213.7
M2_13
1206.6
M2_14
1191.7
M2_15
1188.5
M2_16
1187.7
M2_17
1176.5
M2_18
1172.8
M2_19
1144.4
M2_20
1144.1
M2_21
1137.9
M2_22
1135.4
M2_23
1132.2
M2_24
1114.1
M2_25
1103.1
M2_26
1102.7
M2_27
1101.7
M2_28
1101.5
M2_29
1099.3
M2_30
1098.7
M2_31
1097.8
M2_32
1093.0
M2_33
1092.6
M2_34
1080.0
M2_35
1077.3
M2_36
1072.1
M2_37
1071.1
M2_38
1070.6
M2_39
1070.3
M2_40
1062.5
M2_41
1053.3
M2_42
1045.8
M2_43
1033.1
M2_44
1029.8
M2_45
1029.1
M2_46
1024.2
M2_47
1014.6
M2_48
1012.0
M2_49
1001.5
M2_50
999.2
M2_51
991.2
M2_52
985.2
M2_53
983.7
M2_54
981.8
M2_55
963.7
M2_56
956.1
M2_57
944.2
M2_58
937.3
M2_59
923.1
M2_60
922.7
M2_61
918.2
M2_62
898.4
M2_63
889.6
M2_64
887.1
M2_65
885.3
M2_66
879.9
M2_67
877.9
M2_68
877.5
M2_69
875.0
M2_70
869.6
M2_71
840.2
M2_72
837.5
M2_73
836.6
M2_74
821.2
M2_75
799.8
M2_76
792.0
M2_77
790.5
M2_78
790.5
M2_79
785.1
M2_80
783.3
M2_81
778.0
M2_82
774.5
M2_83
768.7
M2_84
758.5
M2_85
738.6
M2_86
709.4
M2_87
691.4
M2_88
682.3
M2_89
638.0
M2_90
546.4
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