A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.4
nTPM
Monaco:
34.3
nTPM
Schmiedel:
60.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.4
HPA sample
nTPM
NK-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1013
0.9
P10809_1033
0.8
P10809_1052
0.6
P10809_1071
0.0
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.3
Monaco sample
nTPM
NK-cell nTPM: 34.3
Samples: 4
Max nTPM: 40.3
Min nTPM: 26.6
RHH5316_R3683
26.6
RHH5224_R3596
40.3
RHH5253_R3625
40.0
RHH5282_R3654
30.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.0
Schmiedel sample id
TPM
NK-cell TPM: 60.0
Samples: 90
Max TPM: 114.4
Min TPM: 22.5
NK_1
114.4
NK_2
99.1
NK_3
94.4
NK_4
91.4
NK_5
90.5
NK_6
90.1
NK_7
90.0
NK_8
86.3
NK_9
85.7
NK_10
83.9
NK_11
82.2
NK_12
81.9
NK_13
81.3
NK_14
80.4
NK_15
80.2
NK_16
79.6
NK_17
79.4
NK_18
78.3
NK_19
77.0
NK_20
75.1
NK_21
75.0
NK_22
73.5
NK_23
72.7
NK_24
72.4
NK_25
70.9
NK_26
69.3
NK_27
68.7
NK_28
67.4
NK_29
66.3
NK_30
66.1
NK_31
66.0
NK_32
64.9
NK_33
64.7
NK_34
64.3
NK_35
63.9
NK_36
63.8
NK_37
63.2
NK_38
62.8
NK_39
62.6
NK_40
62.6
NK_41
62.1
NK_42
61.1
NK_43
60.7
NK_44
60.2
NK_45
60.1
NK_46
59.9
NK_47
59.9
NK_48
59.7
NK_49
58.8
NK_50
58.6
NK_51
58.5
NK_52
57.1
NK_53
56.8
NK_54
56.7
NK_55
54.9
NK_56
54.2
NK_57
54.2
NK_58
53.6
NK_59
53.5
NK_60
52.8
NK_61
52.6
NK_62
51.6
NK_63
50.7
NK_64
50.6
NK_65
48.7
NK_66
48.6
NK_67
48.5
NK_68
48.0
NK_69
47.9
NK_70
46.8
NK_71
44.6
NK_72
43.1
NK_73
41.3
NK_74
40.8
NK_75
40.4
NK_76
39.9
NK_77
39.5
NK_78
39.5
NK_79
39.5
NK_80
38.4
NK_81
37.1
NK_82
34.7
NK_83
33.8
NK_84
31.4
NK_85
30.3
NK_86
26.7
NK_87
23.6
NK_88
23.5
NK_89
22.8
NK_90
22.5
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