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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:37.7 nTPM
HPA:32.2 nTPM
GTEx:37.7 nTPM
FANTOM5:88.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA067983Antibody CAB017631
Glandular cells LowMedium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.2
overview
Male, age 65
Small intestine sample 232
nTPM: 33.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 30.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 31.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 32.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 37.7
Samples: 187

Max nTPM: 74.5
Min nTPM: 26.2
Std nTPM: 7.4
Median nTPM: 35.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 74.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 70.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 60.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 58.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 55.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 55.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 53.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 52.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 52.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 51.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 50.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 50.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 49.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 49.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 49.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 48.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 48.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 48.1
GTEX-1192X-2526-SM-59868 50-59 years, male 47.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 47.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 47.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 47.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 47.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 47.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 46.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 46.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 45.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 45.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 45.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 45.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 44.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 44.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 44.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 44.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 43.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 43.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 43.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 43.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 42.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 41.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 41.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 41.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 40.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 40.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 40.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 40.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 40.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 40.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 40.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 40.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 39.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 39.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 39.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 39.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 39.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 39.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 39.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 38.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 38.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 38.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 38.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 38.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 38.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 38.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 37.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 37.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 37.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 37.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 37.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 37.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 37.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 37.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 37.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 37.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 37.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 37.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 37.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 37.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 37.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 36.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 36.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 36.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 36.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 36.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 36.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 36.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 36.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 36.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 36.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 35.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 35.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 35.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 35.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 35.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 35.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 35.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 35.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 35.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 35.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 35.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 35.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 35.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 35.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 35.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 35.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 35.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 34.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 34.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 34.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 34.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 34.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 34.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 34.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 34.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 34.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 34.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 34.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 34.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 34.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 34.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 34.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 34.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 34.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 34.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 33.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 33.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 33.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 33.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 33.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 33.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 33.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 33.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 33.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 33.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 33.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 33.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 33.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 32.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 32.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 32.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 32.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 32.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 32.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 32.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 32.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 32.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 32.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 32.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 32.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 32.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 31.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 31.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 31.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 31.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 31.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 31.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 31.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 31.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 31.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 31.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 31.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 31.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 31.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 31.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 31.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 30.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 30.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 30.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 30.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 30.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 30.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 30.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 30.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 30.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 30.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 29.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 29.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 29.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 29.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 29.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 29.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 29.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 28.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 28.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 28.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 28.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 26.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

88.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 88.7
FF:10024-101D6 15,40,85 years, mixed 88.7

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