A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.9
nTPM
Monaco:
76.8
nTPM
Schmiedel:
29.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.9
HPA sample
nTPM
Memory B-cell nTPM: 4.4
Samples: 6
Max nTPM: 6.6
Min nTPM: 0.7
P10809_1017
5.5
P10809_1025
4.2
P10809_1044
0.7
P10809_1063
5.7
P10809_1092
4.0
P10809_1105
6.6
Naive B-cell nTPM: 4.9
Samples: 6
Max nTPM: 7.9
Min nTPM: 0.1
P10809_1011
4.7
P10809_1029
7.9
P10809_1048
0.1
P10809_1067
5.1
P10809_1091
5.6
P10809_1104
6.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 76.9
Samples: 4
Max nTPM: 98.7
Min nTPM: 58.9
RHH5310_R3677
62.7
RHH5218_R3590
87.1
RHH5247_R3619
98.7
RHH5276_R3648
58.9
Naive B-cell nTPM: 64.5
Samples: 4
Max nTPM: 71.1
Min nTPM: 57.0
RHH5308_R3675
57.0
RHH5216_R3588
71.1
RHH5245_R3617
61.7
RHH5274_R3646
68.3
Non-switched memory B-cell nTPM: 65.9
Samples: 4
Max nTPM: 71.1
Min nTPM: 62.4
RHH5309_R3676
65.0
RHH5217_R3589
62.4
RHH5246_R3618
71.1
RHH5275_R3647
65.0
Plasmablast nTPM: 55.2
Samples: 4
Max nTPM: 68.0
Min nTPM: 49.5
RHH5312_R3679
49.5
RHH5220_R3592
51.6
RHH5249_R3621
51.8
RHH5278_R3650
68.0
Switched memory B-cell nTPM: 53.7
Samples: 4
Max nTPM: 71.7
Min nTPM: 33.7
RHH5311_R3678
33.7
RHH5219_R3591
55.2
RHH5248_R3620
71.7
RHH5277_R3649
54.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.6
Schmiedel sample id
TPM
Naive B-cell TPM: 29.6
Samples: 91
Max TPM: 51.5
Min TPM: 19.8
B_CELL_NAIVE_1
51.5
B_CELL_NAIVE_2
36.9
B_CELL_NAIVE_3
35.7
B_CELL_NAIVE_4
35.6
B_CELL_NAIVE_5
35.2
B_CELL_NAIVE_6
35.2
B_CELL_NAIVE_7
35.0
B_CELL_NAIVE_8
34.8
B_CELL_NAIVE_9
34.6
B_CELL_NAIVE_10
34.1
B_CELL_NAIVE_11
33.8
B_CELL_NAIVE_12
33.7
B_CELL_NAIVE_13
33.4
B_CELL_NAIVE_14
33.4
B_CELL_NAIVE_15
32.8
B_CELL_NAIVE_16
32.5
B_CELL_NAIVE_17
32.5
B_CELL_NAIVE_18
32.2
B_CELL_NAIVE_19
32.1
B_CELL_NAIVE_20
32.1
B_CELL_NAIVE_21
32.0
B_CELL_NAIVE_22
32.0
B_CELL_NAIVE_23
31.9
B_CELL_NAIVE_24
31.9
B_CELL_NAIVE_25
31.6
B_CELL_NAIVE_26
31.6
B_CELL_NAIVE_27
31.5
B_CELL_NAIVE_28
31.4
B_CELL_NAIVE_29
31.0
B_CELL_NAIVE_30
30.9
B_CELL_NAIVE_31
30.8
B_CELL_NAIVE_32
30.7
B_CELL_NAIVE_33
30.7
B_CELL_NAIVE_34
30.6
B_CELL_NAIVE_35
30.6
B_CELL_NAIVE_36
30.6
B_CELL_NAIVE_37
30.6
B_CELL_NAIVE_38
30.4
B_CELL_NAIVE_39
30.4
B_CELL_NAIVE_40
30.3
B_CELL_NAIVE_41
30.3
B_CELL_NAIVE_42
30.2
B_CELL_NAIVE_43
30.2
B_CELL_NAIVE_44
30.1
B_CELL_NAIVE_45
30.1
B_CELL_NAIVE_46
29.9
B_CELL_NAIVE_47
29.9
B_CELL_NAIVE_48
29.8
B_CELL_NAIVE_49
29.8
B_CELL_NAIVE_50
29.7
B_CELL_NAIVE_51
29.5
B_CELL_NAIVE_52
29.5
B_CELL_NAIVE_53
29.4
B_CELL_NAIVE_54
29.3
B_CELL_NAIVE_55
29.3
B_CELL_NAIVE_56
29.2
B_CELL_NAIVE_57
29.0
B_CELL_NAIVE_58
28.9
B_CELL_NAIVE_59
28.3
B_CELL_NAIVE_60
28.3
B_CELL_NAIVE_61
28.2
B_CELL_NAIVE_62
28.0
B_CELL_NAIVE_63
28.0
B_CELL_NAIVE_64
27.8
B_CELL_NAIVE_65
27.7
B_CELL_NAIVE_66
27.4
B_CELL_NAIVE_67
27.4
B_CELL_NAIVE_68
27.2
B_CELL_NAIVE_69
26.9
B_CELL_NAIVE_70
26.8
B_CELL_NAIVE_71
26.7
B_CELL_NAIVE_72
26.5
B_CELL_NAIVE_73
26.5
B_CELL_NAIVE_74
26.3
B_CELL_NAIVE_75
26.2
B_CELL_NAIVE_76
26.1
B_CELL_NAIVE_77
25.8
B_CELL_NAIVE_78
25.7
B_CELL_NAIVE_79
25.7
B_CELL_NAIVE_80
25.6
B_CELL_NAIVE_81
25.3
B_CELL_NAIVE_82
25.2
B_CELL_NAIVE_83
25.1
B_CELL_NAIVE_84
23.9
B_CELL_NAIVE_85
23.3
B_CELL_NAIVE_86
23.2
B_CELL_NAIVE_87
21.8
B_CELL_NAIVE_88
21.1
B_CELL_NAIVE_89
20.8
B_CELL_NAIVE_90
20.7
B_CELL_NAIVE_91
19.8
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The Human Protein Atlas project is funded
