A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.1
nTPM
Monaco:
159.4
nTPM
Schmiedel:
41.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.1
HPA sample
nTPM
Classical monocyte nTPM: 19.5
Samples: 6
Max nTPM: 23.6
Min nTPM: 13.5
P10809_1003
22.8
P10809_1020
23.6
P10809_1039
21.2
P10809_1058
16.7
P10809_1080
19.2
P10809_1107
13.5
Intermediate monocyte nTPM: 19.4
Samples: 6
Max nTPM: 23.2
Min nTPM: 12.0
P10809_1004
23.2
P10809_1023
20.6
P10809_1042
22.7
P10809_1061
12.0
P10809_1081
22.0
P10809_1108
16.1
Non-classical monocyte nTPM: 28.1
Samples: 5
Max nTPM: 58.8
Min nTPM: 14.0
P10809_1005
22.8
P10809_1053
24.1
P10809_1072
58.8
P10809_1082
20.8
P10809_1109
14.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
159.4
Monaco sample
nTPM
Classical monocyte nTPM: 159.4
Samples: 4
Max nTPM: 237.2
Min nTPM: 125.3
RHH5313_R3680
130.5
RHH5221_R3593
237.2
RHH5250_R3622
144.7
RHH5279_R3651
125.3
Intermediate monocyte nTPM: 153.7
Samples: 4
Max nTPM: 220.7
Min nTPM: 92.8
RHH5314_R3681
115.0
RHH5222_R3594
220.7
RHH5251_R3623
92.8
RHH5280_R3652
186.4
Non-classical monocyte nTPM: 130.4
Samples: 4
Max nTPM: 160.5
Min nTPM: 105.6
RHH5315_R3682
105.6
RHH5223_R3595
160.5
RHH5252_R3624
141.8
RHH5281_R3653
113.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.1
Schmiedel sample id
TPM
Classical monocyte TPM: 26.4
Samples: 91
Max TPM: 36.6
Min TPM: 19.3
MONOCYTES_1
36.6
MONOCYTES_2
36.2
MONOCYTES_3
35.6
MONOCYTES_4
35.1
MONOCYTES_5
35.0
MONOCYTES_6
33.5
MONOCYTES_7
33.0
MONOCYTES_8
32.6
MONOCYTES_9
31.4
MONOCYTES_10
31.2
MONOCYTES_11
31.2
MONOCYTES_12
31.1
MONOCYTES_13
31.0
MONOCYTES_14
30.8
MONOCYTES_15
30.5
MONOCYTES_16
30.3
MONOCYTES_17
30.0
MONOCYTES_18
30.0
MONOCYTES_19
29.5
MONOCYTES_20
29.3
MONOCYTES_21
28.5
MONOCYTES_22
28.4
MONOCYTES_23
28.4
MONOCYTES_24
28.3
MONOCYTES_25
28.3
MONOCYTES_26
28.3
MONOCYTES_27
28.1
MONOCYTES_28
28.1
MONOCYTES_29
28.0
MONOCYTES_30
27.9
MONOCYTES_31
27.7
MONOCYTES_32
27.4
MONOCYTES_33
27.4
MONOCYTES_34
27.2
MONOCYTES_35
27.2
MONOCYTES_36
27.1
MONOCYTES_37
27.1
MONOCYTES_38
27.1
MONOCYTES_39
27.1
MONOCYTES_40
27.1
MONOCYTES_41
27.0
MONOCYTES_42
26.9
MONOCYTES_43
26.9
MONOCYTES_44
26.8
MONOCYTES_45
26.6
MONOCYTES_46
26.6
MONOCYTES_47
26.6
MONOCYTES_48
26.2
MONOCYTES_49
26.0
MONOCYTES_50
25.6
MONOCYTES_51
25.3
MONOCYTES_52
25.3
MONOCYTES_53
25.0
MONOCYTES_54
25.0
MONOCYTES_55
24.8
MONOCYTES_56
24.8
MONOCYTES_57
24.6
MONOCYTES_58
24.6
MONOCYTES_59
24.5
MONOCYTES_60
24.2
MONOCYTES_61
23.9
MONOCYTES_62
23.9
MONOCYTES_63
23.8
MONOCYTES_64
23.7
MONOCYTES_65
23.7
MONOCYTES_66
23.6
MONOCYTES_67
23.6
MONOCYTES_68
23.5
MONOCYTES_69
23.5
MONOCYTES_70
23.3
MONOCYTES_71
23.3
MONOCYTES_72
23.2
MONOCYTES_73
23.0
MONOCYTES_74
22.9
MONOCYTES_75
22.9
MONOCYTES_76
22.9
MONOCYTES_77
22.8
MONOCYTES_78
22.7
MONOCYTES_79
22.7
MONOCYTES_80
22.2
MONOCYTES_81
21.7
MONOCYTES_82
21.6
MONOCYTES_83
21.3
MONOCYTES_84
20.9
MONOCYTES_85
20.9
MONOCYTES_86
20.5
MONOCYTES_87
20.4
MONOCYTES_88
20.3
MONOCYTES_89
20.1
MONOCYTES_90
19.4
MONOCYTES_91
19.3
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Non-classical monocyte TPM: 41.1
Samples: 90
Max TPM: 61.6
Min TPM: 30.0
M2_1
61.6
M2_2
59.5
M2_3
53.8
M2_4
53.3
M2_5
52.0
M2_6
50.8
M2_7
50.7
M2_8
50.3
M2_9
49.8
M2_10
49.7
M2_11
49.2
M2_12
48.9
M2_13
48.7
M2_14
47.7
M2_15
47.5
M2_16
47.5
M2_17
46.8
M2_18
46.7
M2_19
45.6
M2_20
45.2
M2_21
45.0
M2_22
44.8
M2_23
44.3
M2_24
44.2
M2_25
44.1
M2_26
44.0
M2_27
43.8
M2_28
43.6
M2_29
43.4
M2_30
43.2
M2_31
43.2
M2_32
43.1
M2_33
42.9
M2_34
42.6
M2_35
42.5
M2_36
42.0
M2_37
41.8
M2_38
41.7
M2_39
41.3
M2_40
41.2
M2_41
40.9
M2_42
40.9
M2_43
40.8
M2_44
40.7
M2_45
40.6
M2_46
40.4
M2_47
40.3
M2_48
40.1
M2_49
40.0
M2_50
39.8
M2_51
39.8
M2_52
39.7
M2_53
39.6
M2_54
39.4
M2_55
38.8
M2_56
38.7
M2_57
38.7
M2_58
38.6
M2_59
38.5
M2_60
37.8
M2_61
37.5
M2_62
37.3
M2_63
36.9
M2_64
36.9
M2_65
36.7
M2_66
36.6
M2_67
36.6
M2_68
36.6
M2_69
36.4
M2_70
36.4
M2_71
36.3
M2_72
36.2
M2_73
36.1
M2_74
35.7
M2_75
35.6
M2_76
35.2
M2_77
35.0
M2_78
34.4
M2_79
34.3
M2_80
34.1
M2_81
34.1
M2_82
33.8
M2_83
32.6
M2_84
31.8
M2_85
31.5
M2_86
31.0
M2_87
30.7
M2_88
30.4
M2_89
30.1
M2_90
30.0
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