A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
47.2
nTPM
Monaco:
104.5
nTPM
Schmiedel:
32.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.2
HPA sample
nTPM
Classical monocyte nTPM: 31.3
Samples: 6
Max nTPM: 39.5
Min nTPM: 21.9
P10809_1003
31.4
P10809_1020
37.3
P10809_1039
39.5
P10809_1058
21.9
P10809_1080
29.3
P10809_1107
28.4
Intermediate monocyte nTPM: 41.3
Samples: 6
Max nTPM: 52.2
Min nTPM: 33.7
P10809_1004
51.1
P10809_1023
52.2
P10809_1042
36.1
P10809_1061
40.0
P10809_1081
33.7
P10809_1108
34.6
Non-classical monocyte nTPM: 47.2
Samples: 5
Max nTPM: 79.9
Min nTPM: 24.7
P10809_1005
45.0
P10809_1053
51.9
P10809_1072
79.9
P10809_1082
24.7
P10809_1109
34.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.5
Monaco sample
nTPM
Classical monocyte nTPM: 82.1
Samples: 4
Max nTPM: 114.5
Min nTPM: 63.5
RHH5313_R3680
114.5
RHH5221_R3593
82.8
RHH5250_R3622
67.7
RHH5279_R3651
63.5
Intermediate monocyte nTPM: 104.5
Samples: 4
Max nTPM: 130.0
Min nTPM: 75.4
RHH5314_R3681
126.9
RHH5222_R3594
130.0
RHH5251_R3623
75.4
RHH5280_R3652
85.8
Non-classical monocyte nTPM: 102.6
Samples: 4
Max nTPM: 164.2
Min nTPM: 75.0
RHH5315_R3682
84.9
RHH5223_R3595
164.2
RHH5252_R3624
86.3
RHH5281_R3653
75.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.8
Schmiedel sample id
TPM
Classical monocyte TPM: 21.6
Samples: 91
Max TPM: 27.4
Min TPM: 15.5
MONOCYTES_1
27.4
MONOCYTES_2
26.3
MONOCYTES_3
25.8
MONOCYTES_4
25.7
MONOCYTES_5
25.5
MONOCYTES_6
25.5
MONOCYTES_7
25.1
MONOCYTES_8
24.9
MONOCYTES_9
24.8
MONOCYTES_10
24.7
MONOCYTES_11
24.5
MONOCYTES_12
24.5
MONOCYTES_13
24.4
MONOCYTES_14
24.4
MONOCYTES_15
23.8
MONOCYTES_16
23.7
MONOCYTES_17
23.7
MONOCYTES_18
23.6
MONOCYTES_19
23.6
MONOCYTES_20
23.6
MONOCYTES_21
23.4
MONOCYTES_22
23.4
MONOCYTES_23
23.3
MONOCYTES_24
23.3
MONOCYTES_25
23.2
MONOCYTES_26
23.2
MONOCYTES_27
23.2
MONOCYTES_28
23.1
MONOCYTES_29
23.1
MONOCYTES_30
23.1
MONOCYTES_31
23.0
MONOCYTES_32
23.0
MONOCYTES_33
23.0
MONOCYTES_34
23.0
MONOCYTES_35
22.9
MONOCYTES_36
22.8
MONOCYTES_37
22.8
MONOCYTES_38
22.5
MONOCYTES_39
22.4
MONOCYTES_40
22.3
MONOCYTES_41
22.2
MONOCYTES_42
22.2
MONOCYTES_43
22.2
MONOCYTES_44
22.1
MONOCYTES_45
22.1
MONOCYTES_46
21.8
MONOCYTES_47
21.7
MONOCYTES_48
21.7
MONOCYTES_49
21.7
MONOCYTES_50
21.6
MONOCYTES_51
21.6
MONOCYTES_52
21.3
MONOCYTES_53
21.3
MONOCYTES_54
21.2
MONOCYTES_55
21.1
MONOCYTES_56
21.1
MONOCYTES_57
21.0
MONOCYTES_58
20.9
MONOCYTES_59
20.9
MONOCYTES_60
20.8
MONOCYTES_61
20.8
MONOCYTES_62
20.6
MONOCYTES_63
20.6
MONOCYTES_64
20.6
MONOCYTES_65
20.4
MONOCYTES_66
20.4
MONOCYTES_67
20.3
MONOCYTES_68
20.1
MONOCYTES_69
20.0
MONOCYTES_70
19.9
MONOCYTES_71
19.8
MONOCYTES_72
19.8
MONOCYTES_73
19.7
MONOCYTES_74
19.6
MONOCYTES_75
19.2
MONOCYTES_76
19.2
MONOCYTES_77
19.1
MONOCYTES_78
19.0
MONOCYTES_79
18.7
MONOCYTES_80
18.5
MONOCYTES_81
18.2
MONOCYTES_82
18.2
MONOCYTES_83
17.9
MONOCYTES_84
17.5
MONOCYTES_85
17.4
MONOCYTES_86
17.2
MONOCYTES_87
17.1
MONOCYTES_88
16.7
MONOCYTES_89
15.9
MONOCYTES_90
15.8
MONOCYTES_91
15.5
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Non-classical monocyte TPM: 32.8
Samples: 90
Max TPM: 41.6
Min TPM: 21.2
M2_1
41.6
M2_2
41.1
M2_3
40.4
M2_4
38.8
M2_5
38.6
M2_6
38.5
M2_7
38.4
M2_8
38.3
M2_9
38.2
M2_10
38.1
M2_11
38.0
M2_12
37.9
M2_13
37.7
M2_14
37.6
M2_15
37.5
M2_16
37.2
M2_17
37.2
M2_18
37.2
M2_19
37.1
M2_20
36.8
M2_21
36.7
M2_22
36.4
M2_23
36.4
M2_24
35.9
M2_25
35.7
M2_26
35.6
M2_27
35.5
M2_28
35.4
M2_29
35.3
M2_30
35.3
M2_31
35.0
M2_32
34.7
M2_33
34.7
M2_34
34.4
M2_35
34.2
M2_36
34.1
M2_37
34.0
M2_38
33.9
M2_39
33.8
M2_40
33.7
M2_41
33.5
M2_42
33.5
M2_43
33.4
M2_44
33.4
M2_45
33.3
M2_46
33.3
M2_47
33.1
M2_48
33.0
M2_49
33.0
M2_50
33.0
M2_51
32.8
M2_52
32.8
M2_53
32.5
M2_54
32.2
M2_55
32.1
M2_56
32.1
M2_57
31.9
M2_58
31.9
M2_59
31.7
M2_60
31.7
M2_61
31.7
M2_62
31.5
M2_63
31.3
M2_64
31.2
M2_65
31.2
M2_66
30.9
M2_67
30.5
M2_68
30.4
M2_69
29.8
M2_70
29.5
M2_71
29.4
M2_72
29.1
M2_73
28.7
M2_74
28.7
M2_75
28.5
M2_76
28.4
M2_77
27.6
M2_78
27.4
M2_79
27.3
M2_80
27.3
M2_81
27.2
M2_82
26.6
M2_83
26.3
M2_84
25.7
M2_85
25.4
M2_86
24.6
M2_87
22.0
M2_88
21.9
M2_89
21.8
M2_90
21.2
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