A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.8
nTPM
Monaco:
33.6
nTPM
Schmiedel:
22.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.8
HPA sample
nTPM
Classical monocyte nTPM: 5.8
Samples: 6
Max nTPM: 7.9
Min nTPM: 3.7
P10809_1003
4.7
P10809_1020
5.6
P10809_1039
7.7
P10809_1058
5.4
P10809_1080
3.7
P10809_1107
7.9
Intermediate monocyte nTPM: 5.0
Samples: 6
Max nTPM: 9.9
Min nTPM: 3.1
P10809_1004
5.5
P10809_1023
4.3
P10809_1042
9.9
P10809_1061
4.0
P10809_1081
3.4
P10809_1108
3.1
Non-classical monocyte nTPM: 2.0
Samples: 5
Max nTPM: 4.0
Min nTPM: 0.0
P10809_1005
1.6
P10809_1053
4.0
P10809_1072
0.0
P10809_1082
2.4
P10809_1109
2.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.6
Monaco sample
nTPM
Classical monocyte nTPM: 33.7
Samples: 4
Max nTPM: 45.4
Min nTPM: 21.7
RHH5313_R3680
45.4
RHH5221_R3593
21.7
RHH5250_R3622
30.2
RHH5279_R3651
37.3
Intermediate monocyte nTPM: 19.4
Samples: 4
Max nTPM: 28.5
Min nTPM: 10.5
RHH5314_R3681
25.1
RHH5222_R3594
13.3
RHH5251_R3623
10.5
RHH5280_R3652
28.5
Non-classical monocyte nTPM: 15.7
Samples: 4
Max nTPM: 19.3
Min nTPM: 13.0
RHH5315_R3682
19.3
RHH5223_R3595
14.7
RHH5252_R3624
15.8
RHH5281_R3653
13.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.6
Schmiedel sample id
TPM
Classical monocyte TPM: 22.6
Samples: 91
Max TPM: 34.0
Min TPM: 11.7
MONOCYTES_1
34.0
MONOCYTES_2
33.6
MONOCYTES_3
33.4
MONOCYTES_4
32.7
MONOCYTES_5
32.5
MONOCYTES_6
32.5
MONOCYTES_7
31.9
MONOCYTES_8
31.8
MONOCYTES_9
31.6
MONOCYTES_10
31.3
MONOCYTES_11
31.2
MONOCYTES_12
30.9
MONOCYTES_13
30.3
MONOCYTES_14
30.2
MONOCYTES_15
29.7
MONOCYTES_16
29.3
MONOCYTES_17
29.1
MONOCYTES_18
28.8
MONOCYTES_19
28.6
MONOCYTES_20
28.2
MONOCYTES_21
28.2
MONOCYTES_22
27.7
MONOCYTES_23
27.7
MONOCYTES_24
27.2
MONOCYTES_25
27.0
MONOCYTES_26
26.7
MONOCYTES_27
26.2
MONOCYTES_28
25.8
MONOCYTES_29
25.5
MONOCYTES_30
25.3
MONOCYTES_31
25.2
MONOCYTES_32
24.8
MONOCYTES_33
24.8
MONOCYTES_34
24.8
MONOCYTES_35
24.7
MONOCYTES_36
24.7
MONOCYTES_37
24.4
MONOCYTES_38
24.0
MONOCYTES_39
23.8
MONOCYTES_40
23.6
MONOCYTES_41
22.6
MONOCYTES_42
22.6
MONOCYTES_43
22.1
MONOCYTES_44
22.0
MONOCYTES_45
21.6
MONOCYTES_46
21.5
MONOCYTES_47
21.4
MONOCYTES_48
21.3
MONOCYTES_49
21.2
MONOCYTES_50
21.1
MONOCYTES_51
21.1
MONOCYTES_52
21.0
MONOCYTES_53
20.9
MONOCYTES_54
20.8
MONOCYTES_55
20.5
MONOCYTES_56
19.8
MONOCYTES_57
19.2
MONOCYTES_58
19.1
MONOCYTES_59
18.9
MONOCYTES_60
18.9
MONOCYTES_61
18.7
MONOCYTES_62
18.6
MONOCYTES_63
18.6
MONOCYTES_64
18.6
MONOCYTES_65
18.5
MONOCYTES_66
18.4
MONOCYTES_67
18.1
MONOCYTES_68
18.0
MONOCYTES_69
17.9
MONOCYTES_70
17.8
MONOCYTES_71
17.8
MONOCYTES_72
17.7
MONOCYTES_73
17.5
MONOCYTES_74
17.3
MONOCYTES_75
17.2
MONOCYTES_76
17.1
MONOCYTES_77
17.0
MONOCYTES_78
16.8
MONOCYTES_79
16.6
MONOCYTES_80
16.4
MONOCYTES_81
16.0
MONOCYTES_82
15.9
MONOCYTES_83
15.3
MONOCYTES_84
14.7
MONOCYTES_85
14.6
MONOCYTES_86
14.0
MONOCYTES_87
13.7
MONOCYTES_88
13.6
MONOCYTES_89
12.4
MONOCYTES_90
11.7
MONOCYTES_91
11.7
Show allShow less
Non-classical monocyte TPM: 11.9
Samples: 90
Max TPM: 17.1
Min TPM: 7.2
M2_1
17.1
M2_2
16.6
M2_3
16.5
M2_4
16.5
M2_5
16.1
M2_6
16.1
M2_7
16.0
M2_8
15.9
M2_9
15.7
M2_10
15.5
M2_11
15.4
M2_12
15.3
M2_13
15.1
M2_14
14.7
M2_15
14.7
M2_16
14.6
M2_17
14.6
M2_18
14.5
M2_19
14.1
M2_20
14.0
M2_21
14.0
M2_22
13.9
M2_23
13.8
M2_24
13.8
M2_25
13.7
M2_26
13.6
M2_27
13.3
M2_28
13.2
M2_29
13.2
M2_30
13.1
M2_31
13.1
M2_32
13.1
M2_33
12.9
M2_34
12.9
M2_35
12.8
M2_36
12.2
M2_37
12.2
M2_38
12.1
M2_39
12.1
M2_40
12.0
M2_41
11.9
M2_42
11.9
M2_43
11.6
M2_44
11.6
M2_45
11.5
M2_46
11.3
M2_47
11.3
M2_48
11.3
M2_49
11.3
M2_50
11.3
M2_51
11.3
M2_52
11.2
M2_53
11.1
M2_54
11.0
M2_55
11.0
M2_56
10.9
M2_57
10.9
M2_58
10.8
M2_59
10.8
M2_60
10.8
M2_61
10.8
M2_62
10.8
M2_63
10.5
M2_64
10.4
M2_65
10.1
M2_66
10.1
M2_67
10.0
M2_68
9.9
M2_69
9.8
M2_70
9.7
M2_71
9.7
M2_72
9.7
M2_73
9.6
M2_74
9.6
M2_75
9.6
M2_76
9.4
M2_77
9.3
M2_78
9.1
M2_79
9.1
M2_80
9.0
M2_81
8.8
M2_82
8.7
M2_83
8.7
M2_84
8.7
M2_85
8.6
M2_86
8.4
M2_87
8.0
M2_88
7.9
M2_89
7.9
M2_90
7.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
