MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.7 nTPM
HPA Brain:129.5 nTPM
GTEx:56.7 nTPM
FANTOM5:119.6 Scaled Tags Per Million
Pig:186.8 nTPM
Mouse:209.1 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 129.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.6
2586 Male, age 75, left hemisphere 146.6
2666 Male, age 74, left hemisphere 122.7
1827 Male, age 72, unknown 120.3
2411 Female, age 72, unknown 116.6
2219 Male, age 76, both hemispheres 108.9
2019 Male, age 18, unknown 107.7
1870 Female, age 42, unknown 107.1
2828 Female, age 72, unknown 95.7
1833 Male, age 53, unknown 92.5
1830 Male, age 51, unknown 88.3
Dorsal raphe nucleus
nTPM: 108.5
2047 Male, age 72, unknown 119.0
2298 Female, age 72, unknown 116.0
2750 Male, age 76, both hemispheres 115.1
1828 Male, age 53, unknown 108.6
2016 Female, age 72, unknown 83.8
Inferior colliculus
nTPM: 97.3
2097 Female, age 72, unknown 103.5
1890 Male, age 53, unknown 102.3
1848 Female, age 42, unknown 98.1
2849 Male, age 72, unknown 85.4
Median raphe nucleus
nTPM: 129.2
2220 Male, age 76, midline 129.2
Periaquaductal grey, anterior
nTPM: 114.7
1947 Male, age 18, unknown 123.1
2502 Female, age 75, unknown 112.7
1795 Male, age 51, unknown 108.3
Periaquaductal grey, dorsal
nTPM: 90.4
1840 Male, age 53, unknown 96.8
2464 Female, age 72, unknown 90.4
1831 Male, age 72, unknown 90.3
2850 Male, age 76, both hemispheres 84.1
Periaquaductal grey, lateral
nTPM: 75.0
2053 Male, age 18, unknown 86.3
2272 Male, age 74, both hemispheres 72.6
2140 Male, age 76, both hemispheres 66.0
Pretectal area
nTPM: 113.4
1816 Male, age 51, unknown 156.0
1817 Female, age 42, unknown 142.9
2007 Male, age 72, unknown 142.5
1944 Female, age 72, unknown 141.9
1815 Male, age 53, unknown 123.8
2667 Female, age 75, unknown 107.2
2224 Female, age 72, unknown 100.2
2825 Male, age 18, unknown 95.2
2407 Male, age 75, both hemispheres 92.8
2273 Male, age 74, both hemispheres 74.6
2316 Male, age 76, right hemisphere 69.8
Red nucleus
nTPM: 101.4
1821 Female, age 72, unknown 128.9
2725 Female, age 75, unknown 113.9
2584 Male, age 75, left hemisphere 110.7
2588 Male, age 74, left hemisphere 110.2
2503 Female, age 72, unknown 105.6
1954 Female, age 42, unknown 100.3
2785 Male, age 18, unknown 99.8
1865 Male, age 51, unknown 96.1
1904 Male, age 53, unknown 92.8
2769 Male, age 72, unknown 89.4
2227 Male, age 72, unknown 88.1
2823 Male, age 76, right hemisphere 81.5
Substantia nigra
nTPM: 129.5
1916 Female, age 42, unknown 169.9
2241 Male, age 72, unknown 155.5
1941 Male, age 53, unknown 149.9
1851 Male, age 51, unknown 137.5
1889 Female, age 72, unknown 136.8
2583 Male, age 75, right hemisphere 115.8
2409 Female, age 72, unknown 113.5
2665 Male, age 74, both hemispheres 112.7
2699 Male, age 18, unknown 105.3
2590 Female, age 75, unknown 97.9
Superior colliculus
nTPM: 104.1
2668 Female, age 75, unknown 123.7
2261 Male, age 18, unknown 118.8
2087 Female, age 72, unknown 116.5
2664 Male, age 75, both hemispheres 111.4
1796 Male, age 53, unknown 108.1
1895 Male, age 76, right hemisphere 100.0
2587 Male, age 74, left hemisphere 98.9
1839 Male, age 51, unknown 96.8
1913 Female, age 42, unknown 88.8
1995 Male, age 72, unknown 78.3
Ventral tegmental area
nTPM: 113.6
2218 Male, age 76, both hemispheres 130.4
2410 Female, age 72, unknown 126.6
1915 Female, age 42, unknown 125.3
1942 Male, age 51, unknown 107.4
2223 Female, age 72, unknown 100.5
2021 Male, age 53, unknown 91.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 56.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.7
Samples: 139

Max nTPM: 132.6
Min nTPM: 34.3
Std nTPM: 16.9
Median nTPM: 51.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 132.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 128.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 117.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 107.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 96.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 90.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 86.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 85.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 83.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 82.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 119.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.6
FF:10158-103A5 76 years, female 119.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 186.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 162.3
Samples: 4

Max nTPM: 208.2
Min nTPM: 117.1
Sample A Female 208.2
Sample B Female 128.0
Sample C Male 195.9
Sample D Male 117.1
Midbrain
nTPM: 186.9
Samples: 4

Max nTPM: 250.5
Min nTPM: 154.6
Sample A Female 154.6
Sample B Female 161.8
Sample C Male 250.5
Sample D Male 180.6
Periaqueductal gray
nTPM: 144.6
Samples: 3

Max nTPM: 162.8
Min nTPM: 126.9
Sample B Female 144.1
Sample C Male 162.8
Sample D Male 126.9
Superior colliculi
nTPM: 182.3
Samples: 4

Max nTPM: 239.4
Min nTPM: 119.3
Sample A Female 188.5
Sample B Female 119.3
Sample C Male 239.4
Sample D Male 182.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 209.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 209.1
Samples: 4

Max nTPM: 226.3
Min nTPM: 183.2
Sample A Male 183.2
Sample B Male 220.6
Sample C Female 226.3
Sample D Female 206.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
2461 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 20.4
2460 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 19.8
71765004 Antisense, RP_050926_02_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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