A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.2
nTPM
Monaco:
52.4
nTPM
Schmiedel:
108.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
HPA sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.3
P10809_1003
1.2
P10809_1020
0.9
P10809_1039
0.3
P10809_1058
1.5
P10809_1080
2.0
P10809_1107
1.0
Intermediate monocyte nTPM: 1.0
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.0
P10809_1004
1.1
P10809_1023
0.0
P10809_1042
1.2
P10809_1061
1.0
P10809_1081
2.0
P10809_1108
0.6
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 2.1
Min nTPM: 0.7
P10809_1005
0.7
P10809_1053
2.0
P10809_1072
2.1
P10809_1082
0.8
P10809_1109
0.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.4
Monaco sample
nTPM
Classical monocyte nTPM: 52.4
Samples: 4
Max nTPM: 60.8
Min nTPM: 35.9
RHH5313_R3680
55.1
RHH5221_R3593
57.9
RHH5250_R3622
60.8
RHH5279_R3651
35.9
Intermediate monocyte nTPM: 44.0
Samples: 4
Max nTPM: 63.0
Min nTPM: 35.5
RHH5314_R3681
35.5
RHH5222_R3594
63.0
RHH5251_R3623
40.6
RHH5280_R3652
36.9
Non-classical monocyte nTPM: 45.8
Samples: 4
Max nTPM: 55.4
Min nTPM: 38.9
RHH5315_R3682
43.6
RHH5223_R3595
45.3
RHH5252_R3624
55.4
RHH5281_R3653
38.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.6
Schmiedel sample id
TPM
Classical monocyte TPM: 96.7
Samples: 91
Max TPM: 120.5
Min TPM: 76.7
MONOCYTES_1
120.5
MONOCYTES_2
115.3
MONOCYTES_3
115.1
MONOCYTES_4
115.0
MONOCYTES_5
111.9
MONOCYTES_6
110.7
MONOCYTES_7
110.5
MONOCYTES_8
110.5
MONOCYTES_9
110.4
MONOCYTES_10
109.8
MONOCYTES_11
108.4
MONOCYTES_12
107.9
MONOCYTES_13
107.8
MONOCYTES_14
106.1
MONOCYTES_15
106.1
MONOCYTES_16
105.6
MONOCYTES_17
105.4
MONOCYTES_18
105.1
MONOCYTES_19
104.1
MONOCYTES_20
103.7
MONOCYTES_21
103.3
MONOCYTES_22
102.9
MONOCYTES_23
102.8
MONOCYTES_24
102.3
MONOCYTES_25
102.3
MONOCYTES_26
102.2
MONOCYTES_27
102.0
MONOCYTES_28
101.8
MONOCYTES_29
101.5
MONOCYTES_30
101.2
MONOCYTES_31
101.1
MONOCYTES_32
100.9
MONOCYTES_33
100.5
MONOCYTES_34
100.3
MONOCYTES_35
99.1
MONOCYTES_36
98.7
MONOCYTES_37
98.5
MONOCYTES_38
98.3
MONOCYTES_39
97.8
MONOCYTES_40
97.6
MONOCYTES_41
97.5
MONOCYTES_42
97.5
MONOCYTES_43
97.1
MONOCYTES_44
95.9
MONOCYTES_45
95.9
MONOCYTES_46
95.8
MONOCYTES_47
95.3
MONOCYTES_48
95.3
MONOCYTES_49
94.9
MONOCYTES_50
94.8
MONOCYTES_51
94.2
MONOCYTES_52
94.1
MONOCYTES_53
93.9
MONOCYTES_54
93.7
MONOCYTES_55
93.5
MONOCYTES_56
93.4
MONOCYTES_57
93.3
MONOCYTES_58
93.0
MONOCYTES_59
92.8
MONOCYTES_60
92.7
MONOCYTES_61
92.5
MONOCYTES_62
92.4
MONOCYTES_63
92.4
MONOCYTES_64
92.2
MONOCYTES_65
92.1
MONOCYTES_66
91.9
MONOCYTES_67
91.6
MONOCYTES_68
91.4
MONOCYTES_69
90.4
MONOCYTES_70
90.4
MONOCYTES_71
90.2
MONOCYTES_72
90.0
MONOCYTES_73
89.9
MONOCYTES_74
89.0
MONOCYTES_75
88.3
MONOCYTES_76
88.1
MONOCYTES_77
87.5
MONOCYTES_78
87.4
MONOCYTES_79
86.7
MONOCYTES_80
86.6
MONOCYTES_81
86.3
MONOCYTES_82
86.0
MONOCYTES_83
85.4
MONOCYTES_84
83.2
MONOCYTES_85
81.4
MONOCYTES_86
80.2
MONOCYTES_87
80.1
MONOCYTES_88
80.1
MONOCYTES_89
79.6
MONOCYTES_90
77.4
MONOCYTES_91
76.7
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Non-classical monocyte TPM: 108.6
Samples: 90
Max TPM: 124.6
Min TPM: 74.8
M2_1
124.6
M2_2
124.2
M2_3
123.5
M2_4
120.8
M2_5
120.3
M2_6
120.1
M2_7
120.1
M2_8
119.7
M2_9
119.5
M2_10
119.3
M2_11
117.9
M2_12
117.8
M2_13
117.6
M2_14
117.5
M2_15
117.4
M2_16
117.1
M2_17
116.9
M2_18
116.8
M2_19
116.7
M2_20
116.7
M2_21
116.3
M2_22
116.1
M2_23
115.8
M2_24
115.7
M2_25
115.6
M2_26
115.4
M2_27
115.2
M2_28
114.9
M2_29
114.3
M2_30
114.1
M2_31
113.9
M2_32
113.2
M2_33
113.2
M2_34
113.1
M2_35
112.9
M2_36
112.2
M2_37
112.2
M2_38
111.0
M2_39
111.0
M2_40
111.0
M2_41
110.8
M2_42
110.7
M2_43
110.7
M2_44
110.4
M2_45
110.1
M2_46
109.9
M2_47
109.5
M2_48
108.5
M2_49
108.2
M2_50
108.0
M2_51
107.8
M2_52
107.8
M2_53
107.7
M2_54
107.7
M2_55
107.6
M2_56
107.3
M2_57
106.8
M2_58
106.3
M2_59
105.4
M2_60
105.3
M2_61
105.3
M2_62
104.5
M2_63
104.2
M2_64
103.7
M2_65
103.0
M2_66
102.7
M2_67
102.3
M2_68
101.8
M2_69
101.7
M2_70
101.5
M2_71
101.2
M2_72
101.0
M2_73
100.9
M2_74
100.7
M2_75
100.1
M2_76
99.7
M2_77
99.6
M2_78
99.4
M2_79
97.3
M2_80
96.7
M2_81
96.7
M2_82
96.0
M2_83
95.7
M2_84
94.5
M2_85
94.3
M2_86
93.9
M2_87
91.6
M2_88
89.7
M2_89
86.9
M2_90
74.8
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