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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • EVOLUTION

  • GAS7
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:109.3 nTPM
GTEx:53.1 nTPM
FANTOM5:283.0 Scaled Tags Per Million
Macaque:113.4 nTPM
Pig:40.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.3
Sample id Sample description nTPM
Substantia nigra
nTPM: 109.3
2583 Male, age 75, right hemisphere 223.0
2590 Female, age 75, unknown 173.6
1851 Male, age 51, unknown 106.3
2409 Female, age 72, unknown 102.8
2665 Male, age 74, both hemispheres 99.5
1889 Female, age 72, unknown 97.7
2241 Male, age 72, unknown 84.0
1941 Male, age 53, unknown 76.8
1916 Female, age 42, unknown 65.0
2699 Male, age 18, unknown 64.0

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.1
Samples: 183

Max nTPM: 167.1
Min nTPM: 10.5
Std nTPM: 25.5
Median nTPM: 45.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 167.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 126.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 124.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 120.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 119.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 105.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 103.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 101.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 99.6
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 98.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 96.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 96.1
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 95.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 94.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 92.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 91.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 91.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 90.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 88.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 88.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 85.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 85.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 85.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 83.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 83.6
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 82.3
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 79.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 78.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 78.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 78.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 77.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 77.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 76.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 76.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 75.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 75.4
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 75.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 74.6
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 74.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 73.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 73.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 73.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 72.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 72.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 72.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 69.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 68.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 65.9
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 65.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 65.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 65.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 64.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 64.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 63.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 63.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 63.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 62.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 62.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 61.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 61.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 60.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 59.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 59.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 59.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 59.6
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 58.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 58.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 55.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 54.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 54.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 53.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 53.4
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 53.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 52.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 52.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 52.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 52.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 51.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 51.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 51.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 50.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 50.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 49.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 49.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 48.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 48.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 47.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 47.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 46.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 46.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 45.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 45.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 44.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 44.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 44.5
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 44.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 44.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 44.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 44.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 44.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 44.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 44.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 43.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 43.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 43.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 43.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 43.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 43.0
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 42.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 42.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 42.1
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 41.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 41.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 40.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 40.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 39.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 39.7
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 39.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 39.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 39.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 39.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 39.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 38.8
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 38.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 38.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 38.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 37.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 37.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 37.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 36.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 36.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 36.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 35.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 35.6
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 35.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 35.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 34.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 34.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 33.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 33.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 33.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 33.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 33.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 33.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 32.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 32.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 32.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 31.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 31.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 30.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 30.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 30.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 29.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 29.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 29.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 28.8
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 28.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 28.3
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 28.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 26.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 26.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 26.3
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 26.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 26.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 25.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 24.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 24.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 23.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 23.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 22.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 21.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 21.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 19.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 19.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 17.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 17.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 16.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 14.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 10.5
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

283.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 283.0
FF:10158-103A5 76 years, female 283.0

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 113.4
Samples: 1

Max nTPM: 113.4
Min nTPM: 113.4
Sample A 113.4

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.3
Samples: 3

Max nTPM: 43.5
Min nTPM: 38.4
Sample A Female 43.5
Sample B Female 38.4
Sample C Male 38.9

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