A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.3
nTPM
Monaco:
147.7
nTPM
Schmiedel:
171.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.3
HPA sample
nTPM
Classical monocyte nTPM: 26.3
Samples: 6
Max nTPM: 36.7
Min nTPM: 23.2
P10809_1003
36.7
P10809_1020
27.0
P10809_1039
23.8
P10809_1058
23.3
P10809_1080
23.2
P10809_1107
23.7
Intermediate monocyte nTPM: 6.9
Samples: 6
Max nTPM: 9.4
Min nTPM: 5.0
P10809_1004
5.0
P10809_1023
9.4
P10809_1042
5.1
P10809_1061
8.8
P10809_1081
6.3
P10809_1108
6.9
Non-classical monocyte nTPM: 4.9
Samples: 5
Max nTPM: 8.4
Min nTPM: 3.8
P10809_1005
4.0
P10809_1053
4.2
P10809_1072
8.4
P10809_1082
3.8
P10809_1109
4.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
147.7
Monaco sample
nTPM
Classical monocyte nTPM: 147.7
Samples: 4
Max nTPM: 168.5
Min nTPM: 136.8
RHH5313_R3680
136.8
RHH5221_R3593
168.5
RHH5250_R3622
146.5
RHH5279_R3651
139.1
Intermediate monocyte nTPM: 57.2
Samples: 4
Max nTPM: 67.0
Min nTPM: 51.8
RHH5314_R3681
55.0
RHH5222_R3594
55.0
RHH5251_R3623
67.0
RHH5280_R3652
51.8
Non-classical monocyte nTPM: 33.3
Samples: 4
Max nTPM: 36.6
Min nTPM: 28.8
RHH5315_R3682
31.8
RHH5223_R3595
28.8
RHH5252_R3624
36.6
RHH5281_R3653
35.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.4
Schmiedel sample id
TPM
Classical monocyte TPM: 171.4
Samples: 91
Max TPM: 217.9
Min TPM: 138.3
MONOCYTES_1
217.9
MONOCYTES_2
205.2
MONOCYTES_3
204.1
MONOCYTES_4
203.9
MONOCYTES_5
203.8
MONOCYTES_6
203.1
MONOCYTES_7
202.8
MONOCYTES_8
201.8
MONOCYTES_9
201.7
MONOCYTES_10
199.5
MONOCYTES_11
199.4
MONOCYTES_12
196.3
MONOCYTES_13
195.9
MONOCYTES_14
195.4
MONOCYTES_15
193.3
MONOCYTES_16
191.1
MONOCYTES_17
190.9
MONOCYTES_18
190.9
MONOCYTES_19
188.5
MONOCYTES_20
188.0
MONOCYTES_21
187.9
MONOCYTES_22
186.0
MONOCYTES_23
185.4
MONOCYTES_24
185.3
MONOCYTES_25
184.8
MONOCYTES_26
182.7
MONOCYTES_27
182.4
MONOCYTES_28
182.1
MONOCYTES_29
182.0
MONOCYTES_30
181.4
MONOCYTES_31
180.0
MONOCYTES_32
179.2
MONOCYTES_33
179.1
MONOCYTES_34
178.2
MONOCYTES_35
178.1
MONOCYTES_36
176.4
MONOCYTES_37
175.7
MONOCYTES_38
175.5
MONOCYTES_39
175.4
MONOCYTES_40
172.8
MONOCYTES_41
172.4
MONOCYTES_42
171.6
MONOCYTES_43
171.6
MONOCYTES_44
171.5
MONOCYTES_45
170.1
MONOCYTES_46
169.9
MONOCYTES_47
169.6
MONOCYTES_48
169.2
MONOCYTES_49
168.8
MONOCYTES_50
167.9
MONOCYTES_51
167.4
MONOCYTES_52
166.7
MONOCYTES_53
166.7
MONOCYTES_54
165.6
MONOCYTES_55
165.2
MONOCYTES_56
164.6
MONOCYTES_57
163.1
MONOCYTES_58
162.9
MONOCYTES_59
162.5
MONOCYTES_60
162.2
MONOCYTES_61
161.8
MONOCYTES_62
161.1
MONOCYTES_63
160.9
MONOCYTES_64
160.1
MONOCYTES_65
157.8
MONOCYTES_66
157.0
MONOCYTES_67
156.3
MONOCYTES_68
154.3
MONOCYTES_69
154.1
MONOCYTES_70
153.8
MONOCYTES_71
153.3
MONOCYTES_72
152.8
MONOCYTES_73
152.5
MONOCYTES_74
152.4
MONOCYTES_75
151.7
MONOCYTES_76
151.0
MONOCYTES_77
149.8
MONOCYTES_78
149.8
MONOCYTES_79
148.3
MONOCYTES_80
148.2
MONOCYTES_81
147.7
MONOCYTES_82
147.6
MONOCYTES_83
147.1
MONOCYTES_84
145.2
MONOCYTES_85
144.1
MONOCYTES_86
143.2
MONOCYTES_87
142.3
MONOCYTES_88
140.8
MONOCYTES_89
140.6
MONOCYTES_90
139.5
MONOCYTES_91
138.3
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Non-classical monocyte TPM: 66.8
Samples: 90
Max TPM: 114.5
Min TPM: 28.3
M2_1
114.5
M2_2
111.5
M2_3
107.1
M2_4
102.4
M2_5
100.7
M2_6
98.4
M2_7
97.2
M2_8
96.7
M2_9
96.5
M2_10
91.7
M2_11
91.3
M2_12
89.3
M2_13
86.9
M2_14
85.5
M2_15
85.1
M2_16
83.6
M2_17
83.2
M2_18
82.5
M2_19
81.6
M2_20
80.9
M2_21
80.5
M2_22
80.3
M2_23
79.9
M2_24
78.1
M2_25
77.1
M2_26
76.9
M2_27
76.4
M2_28
74.8
M2_29
74.7
M2_30
74.6
M2_31
74.4
M2_32
73.7
M2_33
73.0
M2_34
71.6
M2_35
71.0
M2_36
70.0
M2_37
69.8
M2_38
68.6
M2_39
68.2
M2_40
67.5
M2_41
67.3
M2_42
66.7
M2_43
66.3
M2_44
65.1
M2_45
65.0
M2_46
63.9
M2_47
63.4
M2_48
63.2
M2_49
62.9
M2_50
62.4
M2_51
61.4
M2_52
61.1
M2_53
60.9
M2_54
60.2
M2_55
59.3
M2_56
59.3
M2_57
59.3
M2_58
59.2
M2_59
58.5
M2_60
56.3
M2_61
55.4
M2_62
54.7
M2_63
54.6
M2_64
54.6
M2_65
54.5
M2_66
54.2
M2_67
54.1
M2_68
54.0
M2_69
53.9
M2_70
53.5
M2_71
52.4
M2_72
52.1
M2_73
51.2
M2_74
50.6
M2_75
50.5
M2_76
50.2
M2_77
47.4
M2_78
47.1
M2_79
46.3
M2_80
46.0
M2_81
45.8
M2_82
44.3
M2_83
43.5
M2_84
41.5
M2_85
41.5
M2_86
40.7
M2_87
40.3
M2_88
29.5
M2_89
28.8
M2_90
28.3
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