MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.9 nTPM
HPA Brain:28.5 nTPM
GTEx:38.9 nTPM
FANTOM5:8.7 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:6.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.5
2411 Female, age 72, unknown 31.4
2828 Female, age 72, unknown 29.8
1870 Female, age 42, unknown 28.7
1827 Male, age 72, unknown 26.5
2019 Male, age 18, unknown 25.9
1830 Male, age 51, unknown 25.7
1833 Male, age 53, unknown 25.1
2586 Male, age 75, left hemisphere 22.1
2666 Male, age 74, left hemisphere 21.6
2219 Male, age 76, both hemispheres 18.3
Dorsal raphe nucleus
nTPM: 23.2
2750 Male, age 76, both hemispheres 28.1
2298 Female, age 72, unknown 23.0
2016 Female, age 72, unknown 22.0
1828 Male, age 53, unknown 21.7
2047 Male, age 72, unknown 21.4
Inferior colliculus
nTPM: 20.8
1890 Male, age 53, unknown 23.1
1848 Female, age 42, unknown 21.3
2097 Female, age 72, unknown 20.5
2849 Male, age 72, unknown 18.2
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Periaquaductal grey, anterior
nTPM: 24.2
2502 Female, age 75, unknown 25.6
1947 Male, age 18, unknown 25.1
1795 Male, age 51, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 20.2
2464 Female, age 72, unknown 24.2
1831 Male, age 72, unknown 20.7
1840 Male, age 53, unknown 18.4
2850 Male, age 76, both hemispheres 17.6
Periaquaductal grey, lateral
nTPM: 21.0
2272 Male, age 74, both hemispheres 22.7
2053 Male, age 18, unknown 21.4
2140 Male, age 76, both hemispheres 19.0
Pretectal area
nTPM: 22.8
2667 Female, age 75, unknown 28.5
2007 Male, age 72, unknown 24.3
1815 Male, age 53, unknown 23.8
1817 Female, age 42, unknown 23.3
2273 Male, age 74, both hemispheres 22.9
2825 Male, age 18, unknown 22.8
2316 Male, age 76, right hemisphere 22.2
1816 Male, age 51, unknown 21.8
2224 Female, age 72, unknown 21.7
2407 Male, age 75, both hemispheres 20.5
1944 Female, age 72, unknown 19.1
Red nucleus
nTPM: 28.5
1904 Male, age 53, unknown 32.9
2823 Male, age 76, right hemisphere 31.3
1821 Female, age 72, unknown 30.8
1865 Male, age 51, unknown 30.2
2769 Male, age 72, unknown 29.5
2227 Male, age 72, unknown 29.4
2588 Male, age 74, left hemisphere 28.4
1954 Female, age 42, unknown 27.6
2725 Female, age 75, unknown 27.6
2503 Female, age 72, unknown 27.2
2785 Male, age 18, unknown 24.8
2584 Male, age 75, left hemisphere 21.9
Substantia nigra
nTPM: 21.1
2409 Female, age 72, unknown 27.2
1851 Male, age 51, unknown 23.7
1889 Female, age 72, unknown 23.4
2665 Male, age 74, both hemispheres 21.1
2699 Male, age 18, unknown 21.0
2583 Male, age 75, right hemisphere 20.7
2590 Female, age 75, unknown 19.6
1941 Male, age 53, unknown 19.0
1916 Female, age 42, unknown 18.9
2241 Male, age 72, unknown 16.4
Superior colliculus
nTPM: 23.4
1995 Male, age 72, unknown 28.9
1913 Female, age 42, unknown 28.6
2261 Male, age 18, unknown 24.3
1895 Male, age 76, right hemisphere 24.2
1796 Male, age 53, unknown 23.4
2587 Male, age 74, left hemisphere 22.6
2664 Male, age 75, both hemispheres 22.0
1839 Male, age 51, unknown 21.5
2087 Female, age 72, unknown 19.6
2668 Female, age 75, unknown 19.1
Ventral tegmental area
nTPM: 24.0
1915 Female, age 42, unknown 25.9
2410 Female, age 72, unknown 24.8
1942 Male, age 51, unknown 24.2
2223 Female, age 72, unknown 24.0
2218 Male, age 76, both hemispheres 22.6
2021 Male, age 53, unknown 22.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.9
Samples: 139

Max nTPM: 101.8
Min nTPM: 14.4
Std nTPM: 13.8
Median nTPM: 36.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 101.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 96.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 84.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 74.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 74.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 65.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 65.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 62.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 60.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 58.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.7
FF:10158-103A5 76 years, female 8.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.7
Samples: 4

Max nTPM: 12.7
Min nTPM: 8.2
Sample A Female 12.7
Sample B Female 8.2
Sample C Male 8.9
Sample D Male 9.0
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 16.8
Min nTPM: 7.3
Sample A Female 16.8
Sample B Female 7.3
Sample C Male 11.0
Sample D Male 7.5
Periaqueductal gray
nTPM: 6.2
Samples: 3

Max nTPM: 7.0
Min nTPM: 5.6
Sample B Female 7.0
Sample C Male 6.0
Sample D Male 5.6
Superior colliculi
nTPM: 11.2
Samples: 4

Max nTPM: 12.9
Min nTPM: 8.0
Sample A Female 12.9
Sample B Female 12.0
Sample C Male 11.7
Sample D Male 8.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 8.0
Min nTPM: 4.9
Sample A Male 8.0
Sample B Male 5.5
Sample C Female 7.1
Sample D Female 4.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68191252 Antisense, RP_041123_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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