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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:45.9 nTPM
HPA Brain:28.7 nTPM
GTEx:45.9 nTPM
FANTOM5:4.6 Scaled Tags Per Million
Pig:12.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 27.9
1981 Female, age 72, midline 32.6
2194 Female, age 79, both hemispheres 29.1
2816 Male, age 47, midline 27.0
2565 Male, age 75, midline 26.6
2048 Male, age 55, midline 24.2
Cervical spinal cord, dorsal horn
nTPM: 26.5
2173 Female, age 72, unknown 37.2
2296 Male, age 66, both hemispheres 34.1
1877 Male, age 55, unknown 26.0
2069 Male, age 47, both hemispheres 25.6
2721 Male, age 90, both hemispheres 18.8
2297 Male, age 75, both hemispheres 17.3
Cervical spinal cord, ventral horn
nTPM: 28.7
2098 Female, age 72, unknown 37.6
2295 Male, age 66, both hemispheres 30.4
2068 Male, age 55, unknown 28.1
2809 Male, age 90, both hemispheres 26.6
2820 Female, age 79, both hemispheres 25.0
2480 Male, age 75, both hemispheres 24.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 45.9
Samples: 159

Max nTPM: 81.2
Min nTPM: 17.8
Std nTPM: 13.6
Median nTPM: 45.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 81.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 79.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 79.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 77.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 73.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 72.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 71.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 71.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 70.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 70.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 69.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 69.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 69.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 66.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 65.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 65.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 64.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 64.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 63.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 63.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 63.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 62.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 62.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 61.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 60.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 60.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 59.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 59.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 59.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 57.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 57.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 56.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 56.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 55.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 55.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 55.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 54.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 54.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 54.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 54.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 53.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 53.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 52.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 52.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 52.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 52.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 52.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 52.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 51.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 51.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 51.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 51.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 51.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 51.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 51.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 50.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 50.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 50.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 50.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 50.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 49.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 49.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 49.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 49.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 49.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 48.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 48.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 48.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 47.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 47.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 47.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 46.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 46.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 46.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 46.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 46.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 46.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 45.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 45.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 45.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 44.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 44.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 44.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 44.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 43.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 43.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 43.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 43.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 43.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 43.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 43.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 42.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 42.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 42.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 41.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 41.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 41.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 41.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 41.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 41.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 41.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 41.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 40.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 40.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 39.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 39.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 39.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 38.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 38.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 38.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 37.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 37.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 37.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 36.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 36.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 36.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 36.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 36.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 36.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 36.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 35.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 34.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 34.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 34.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 34.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 33.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 33.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 33.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 33.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 32.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 32.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 32.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 32.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 31.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 31.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 30.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 30.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 29.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 29.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 29.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 29.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 29.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 29.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 29.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 29.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 28.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 27.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 27.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 27.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 26.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 25.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 25.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 24.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 22.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 22.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 20.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 20.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 19.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 17.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 4.6
FF:10159-103A6 76 years, female 5.4
FF:10181-103D1 60 years, female 3.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 12.7
Samples: 4

Max nTPM: 18.4
Min nTPM: 10.4
Sample A Female 11.3
Sample B Female 10.5
Sample C Male 18.4
Sample D Male 10.4
Ventral spinal cord
nTPM: 12.7
Samples: 4

Max nTPM: 13.8
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 13.3
Sample C Male 13.8
Sample D Male 13.1

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