A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
77.1
nTPM
Monaco:
175.3
nTPM
Schmiedel:
181.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.1
HPA sample
nTPM
NK-cell nTPM: 77.1
Samples: 6
Max nTPM: 119.9
Min nTPM: 49.0
P10809_1013
51.7
P10809_1033
67.4
P10809_1052
49.0
P10809_1071
75.3
P10809_1093
119.9
P10809_1103
99.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
175.3
Monaco sample
nTPM
NK-cell nTPM: 175.3
Samples: 4
Max nTPM: 238.2
Min nTPM: 127.3
RHH5316_R3683
238.2
RHH5224_R3596
153.3
RHH5253_R3625
182.4
RHH5282_R3654
127.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.1
Schmiedel sample id
TPM
NK-cell TPM: 181.1
Samples: 90
Max TPM: 392.6
Min TPM: 30.3
NK_1
392.6
NK_2
391.9
NK_3
380.7
NK_4
376.5
NK_5
355.0
NK_6
348.9
NK_7
345.9
NK_8
341.4
NK_9
322.2
NK_10
316.8
NK_11
302.8
NK_12
292.6
NK_13
273.7
NK_14
266.1
NK_15
266.0
NK_16
257.4
NK_17
256.8
NK_18
254.0
NK_19
244.6
NK_20
243.8
NK_21
242.7
NK_22
242.4
NK_23
241.8
NK_24
235.1
NK_25
230.8
NK_26
228.3
NK_27
224.3
NK_28
220.3
NK_29
218.7
NK_30
218.5
NK_31
212.1
NK_32
211.7
NK_33
207.4
NK_34
203.3
NK_35
198.2
NK_36
194.5
NK_37
186.5
NK_38
185.6
NK_39
184.8
NK_40
182.9
NK_41
181.5
NK_42
171.6
NK_43
170.1
NK_44
166.6
NK_45
166.2
NK_46
165.8
NK_47
165.7
NK_48
163.3
NK_49
159.4
NK_50
158.8
NK_51
156.5
NK_52
153.7
NK_53
153.0
NK_54
150.4
NK_55
141.2
NK_56
139.1
NK_57
136.8
NK_58
135.6
NK_59
134.2
NK_60
133.3
NK_61
132.0
NK_62
131.2
NK_63
128.1
NK_64
124.9
NK_65
123.1
NK_66
122.0
NK_67
120.8
NK_68
117.4
NK_69
114.6
NK_70
108.9
NK_71
107.7
NK_72
101.8
NK_73
100.6
NK_74
97.0
NK_75
93.8
NK_76
93.3
NK_77
84.7
NK_78
83.0
NK_79
82.3
NK_80
79.3
NK_81
76.9
NK_82
67.8
NK_83
67.8
NK_84
64.2
NK_85
59.1
NK_86
52.8
NK_87
46.0
NK_88
43.6
NK_89
38.7
NK_90
30.3
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