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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

120.088
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:59.0 nTPM
FANTOM5:61.3 Scaled Tags Per Million
Pig:34.4 nTPM
Allen mouse:4.9 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB079064
Medulla oblongata mean intensity 120.088
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 120.088
Raphe magnus nucleus 93.616
Cochlear nucleus 33.084
Lateral paragigantocellular nucleus 113.425
Raphe pallidus nucleus 44.455
Facial nucleus 53.226
Hypoglossal nucleus 66.978
Ambiguus nucleus 107.706
External cuneate nucleus 58.076
Inferior olivary nucleus 81.825
Raphe obscures nucleus 109.382
Dorsal motor nucleus of vagus 91.791

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.0
Sample id Sample description nTPM
Area postrema
nTPM: 28.1
2054 Male, age 76, both hemispheres 31.6
2306 Male, age 80, both hemispheres 28.4
2799 Male, age 61, both hemispheres 24.3
Dorsal medullary reticular nucleus
nTPM: 45.6
2040 Female, age 85, both hemispheres 57.8
2373 Male, age 61, both hemispheres 41.1
2088 Male, age 76, both hemispheres 38.0
Dorsal motor vagal complex
nTPM: 38.1
2133 Female, age 91, both hemispheres 52.8
2000 Male, age 74, unknown 45.5
2813 Female, age 72, unknown 38.9
2643 Male, age 74, both hemispheres 38.4
2844 Male, age 55, unknown 36.5
2797 Male, age 61, both hemispheres 31.4
2807 Female, age 85, both hemispheres 31.3
2185 Male, age 76, both hemispheres 29.9
Gigantocellular reticular nuclei, medullary
nTPM: 50.1
2462 Male, age 74, both hemispheres 61.3
2022 Male, age 76, right hemisphere 58.4
1876 Female, age 85, both hemispheres 47.4
2387 Female, age 91, both hemispheres 46.5
2314 Male, age 61, both hemispheres 44.6
2310 Male, age 80, both hemispheres 42.6
Gigantocellular reticular nuclei, pars
nTPM: 50.5
2168 Male, age 76, both hemispheres 75.1
2084 Female, age 85, both hemispheres 49.2
2336 Male, age 61, both hemispheres 44.7
2706 Male, age 80, both hemispheres 43.4
2330 Male, age 80, both hemispheres 39.9
Inferior olive
nTPM: 44.7
2085 Female, age 85, both hemispheres 59.4
2563 Male, age 74, both hemispheres 50.5
2178 Male, age 61, both hemispheres 40.1
2628 Female, age 91, both hemispheres 37.5
2379 Male, age 80, both hemispheres 35.7
Lateral medullary reticular nucleus
nTPM: 47.0
2044 Male, age 76, both hemispheres 60.1
2374 Male, age 61, both hemispheres 53.7
2190 Female, age 85, both hemispheres 46.4
2305 Male, age 74, both hemispheres 46.3
2804 Female, age 91, both hemispheres 44.9
2852 Male, age 80, both hemispheres 30.9
Medial olivary nucleus
nTPM: 32.7
2138 Female, age 91, both hemispheres 39.8
2851 Male, age 80, both hemispheres 32.6
1943 Male, age 61, both hemispheres 29.6
1962 Male, age 76, both hemispheres 28.9
Medial vestibular nucleus
nTPM: 49.5
2803 Female, age 91, both hemispheres 58.4
2093 Male, age 80, both hemispheres 55.3
2743 Female, age 85, both hemispheres 47.9
2801 Male, age 74, both hemispheres 47.7
2134 Male, age 76, both hemispheres 45.1
2624 Male, age 61, both hemispheres 42.6
Motor hypoglossal nucleus
nTPM: 45.8
2132 Female, age 85, both hemispheres 54.9
2125 Female, age 91, both hemispheres 54.5
2461 Male, age 61, both hemispheres 53.6
2182 Male, age 80, both hemispheres 34.2
2277 Male, age 76, both hemispheres 31.5
Nucleus ambiguus
nTPM: 39.3
2096 Female, age 85, both hemispheres 43.2
2071 Male, age 76, both hemispheres 35.4
Nucleus cuneatus
nTPM: 37.9
2131 Male, age 76, both hemispheres 54.0
2100 Male, age 76, both hemispheres 45.1
2564 Male, age 74, both hemispheres 44.9
2376 Male, age 61, both hemispheres 38.6
2562 Male, age 61, both hemispheres 37.3
2381 Male, age 80, both hemispheres 35.6
2805 Female, age 91, both hemispheres 30.4
2380 Male, age 80, both hemispheres 28.6
2808 Female, age 85, both hemispheres 26.6
Nucleus gracilis
nTPM: 31.2
2627 Male, age 74, both hemispheres 41.1
2382 Male, age 80, both hemispheres 28.9
2299 Female, age 85, both hemispheres 23.8
Nucleus raphe obscurus
nTPM: 41.6
2800 Male, age 61, midline 52.1
2845 Female, age 85, midline 50.5
2142 Male, age 76, midline 22.3
Nucleus raphe pallidus
nTPM: 34.9
1924 Male, age 61, midline 39.7
2183 Male, age 80, midline 38.1
2145 Male, age 76, midline 27.0
Nucleus tractus solitarii
nTPM: 42.6
2144 Female, age 91, right hemisphere 67.9
2656 Male, age 76, both hemispheres 40.3
2191 Female, age 85, both hemispheres 33.2
2307 Male, age 80, both hemispheres 29.1
Parvicellular reticular nuclei
nTPM: 46.5
2558 Male, age 74, both hemispheres 49.7
2095 Male, age 76, both hemispheres 46.9
2119 Male, age 80, both hemispheres 43.0
Parvicellular reticular nuclei, medullary
nTPM: 52.2
2189 Female, age 91, both hemispheres 54.8
2181 Male, age 80, left hemisphere 51.4
2091 Female, age 85, both hemispheres 50.6
Peritrigeminal nucleus
nTPM: 47.7
2136 Male, age 76, both hemispheres 50.1
2179 Male, age 61, both hemispheres 48.3
2067 Female, age 85, both hemispheres 44.8
Prepositus hypoglossal nucleus
nTPM: 40.9
2855 Female, age 85, right hemisphere 45.2
2086 Male, age 80, both hemispheres 36.6
Spinal trigeminal nucleus, caudal
nTPM: 45.7
2390 Female, age 91, both hemispheres 60.4
2447 Male, age 76, both hemispheres 53.1
2312 Male, age 61, both hemispheres 39.7
2642 Male, age 74, both hemispheres 38.5
2308 Male, age 80, both hemispheres 36.7
Spinal trigeminal nucleus, interpolar
nTPM: 59.0
2066 Male, age 76, right hemisphere 70.7
2625 Male, age 61, both hemispheres 67.0
2386 Female, age 85, both hemispheres 54.3
2389 Female, age 91, both hemispheres 54.0
2033 Male, age 80, both hemispheres 48.9
Spinal vestibular nucleus
nTPM: 47.0
2186 Female, age 91, both hemispheres 58.6
2806 Female, age 85, both hemispheres 52.0
2780 Male, age 80, both hemispheres 51.7
2748 Male, age 76, both hemispheres 42.3
2796 Male, age 61, both hemispheres 40.0
2384 Male, age 74, both hemispheres 37.4
Superior vestibular nucleus
nTPM: 41.1
2383 Male, age 74, both hemispheres 46.6
2015 Male, age 80, both hemispheres 44.8
2061 Male, age 76, both hemispheres 31.9
Ventral medullary reticular nucleus
nTPM: 46.0
2372 Male, age 61, both hemispheres 51.8
2060 Male, age 76, both hemispheres 40.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 47.7
1986 Male, age 76, both hemispheres 55.2
2741 Female, age 85, both hemispheres 54.8
2180 Male, age 61, both hemispheres 48.8
2302 Female, age 91, both hemispheres 42.2
2118 Male, age 80, both hemispheres 37.8

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 61.3
FF:10038-101F2 18-64 years, mixed 75.3
FF:10155-103A2 76 years, female 62.1
FF:10174-103C3 60 years, female 46.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 34.4
Samples: 4

Max nTPM: 44.5
Min nTPM: 23.9
Sample A Female 44.5
Sample B Female 37.8
Sample C Male 31.5
Sample D Male 23.9

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.9
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.9
70787002 Antisense, RP_050706_03_D09, Mouse strain C57BL/6J (56 days, male) 4.9

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