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ADAM22
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

132.676
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:65.1 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:42.1 nTPM
Mouse:31.8 nTPM
Allen mouse:6.6 Expression energy

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB079064
Thalamus mean intensity 132.676
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Medial geniculate nucleus 109.183
Parafascicular thalamic nucleus 102.169
Pregeniculate nucleus 111.202
Stria terminalis 115.348
Zona incerta 109.797
Anterodorsal thalamic nucleus 127.297
Reticular thalamic nucleus 99.747
Vental anterior thalamic nucleus 119.518
Medial habenular nucleus 102.335
Laterodorsal thalamic area 131.844
Paraventricular thalamic nucleus 108.901
Central medial thalamic area 132.676
Ventral lateral thalamic area -
Ventral medial thalamic area 127.016
Lateral habenulal nucleus 97.214
Ventral posterior thalamus 88.349
Anterior pretactal nucleus 81.105
Retromammillary nucleus 113.065

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 48.3
2032 Female, age 42, unknown 73.8
2497 Male, age 66, unknown 44.0
2396 Male, age 61, right hemisphere 27.2
Centromedial thalamic nucleus
nTPM: 54.3
2401 Male, age 76, right hemisphere 83.8
2279 Female, age 85, left hemisphere 24.7
Habenula
nTPM: 45.5
1957 Male, age 80, both hemispheres 53.5
2203 Male, age 61, left hemisphere 47.9
2252 Male, age 62, unknown 40.9
2276 Male, age 66, unknown 39.5
Lateral geniculate body
nTPM: 65.1
2106 Female, age 67, right hemisphere 93.2
2399 Male, age 61, left hemisphere 88.2
1953 Male, age 62, unknown 87.0
2035 Female, age 72, unknown 82.5
2857 Male, age 74, right hemisphere 47.3
2841 Male, age 80, both hemispheres 42.3
2659 Male, age 66, unknown 40.6
2575 Female, age 94, right hemisphere 39.5
Lateral thalamic nuclei
nTPM: 45.1
2765 Female, age 67, both hemispheres 58.1
1903 Male, age 76, left hemisphere 44.8
2577 Male, age 74, both hemispheres 43.3
2573 Female, age 94, left hemisphere 42.1
2661 Female, age 72, unknown 37.2
Medial dorsal thalamic nucleus
nTPM: 43.5
1859 Male, age 76, both hemispheres 59.7
2283 Male, age 80, right hemisphere 53.1
2498 Male, age 66, unknown 48.9
2492 Male, age 75, right hemisphere 48.0
1810 Male, age 48, unknown 45.6
1971 Male, age 61, right hemisphere 44.6
2026 Male, age 62, unknown 42.7
1930 Female, age 42, unknown 42.1
2576 Male, age 74, both hemispheres 40.6
2660 Female, age 72, unknown 39.4
2402 Female, age 67, both hemispheres 37.7
2039 Female, age 72, unknown 34.1
2572 Female, age 94, right hemisphere 28.9
Medial geniculate body
nTPM: 45.3
1811 Female, age 42, unknown 60.1
2650 Female, age 94, left hemisphere 47.7
2657 Male, age 74, right hemisphere 46.9
2571 Male, age 75, right hemisphere 45.7
2207 Male, age 80, right hemisphere 43.2
2049 Male, age 76, both hemispheres 38.2
2217 Female, age 72, unknown 35.6
Nucleus reuniens
nTPM: 38.5
2212 Female, age 67, left hemisphere 46.5
2205 Male, age 80, left hemisphere 38.2
2210 Female, age 85, left hemisphere 31.0
Nucleus rhomboideus
nTPM: 37.7
2206 Male, age 80, both hemispheres 52.8
2280 Female, age 85, left hemisphere 30.9
2213 Female, age 67, left hemisphere 29.5
Posterior thalamic nucleus
nTPM: 40.6
2266 Male, age 76, right hemisphere 49.2
2655 Male, age 74, right hemisphere 44.6
2495 Female, age 67, right hemisphere 36.7
2649 Female, age 94, both hemispheres 31.9
Pulvinar
nTPM: 56.9
2398 Male, age 61, left hemisphere 80.4
1932 Male, age 80, right hemisphere 79.2
1972 Male, age 62, unknown 70.7
1899 Female, age 42, unknown 59.8
2496 Female, age 67, right hemisphere 51.5
2214 Male, age 76, right hemisphere 48.9
2724 Male, age 74, right hemisphere 48.7
2499 Male, age 66, unknown 48.5
1929 Male, age 48, unknown 46.7
2582 Female, age 72, unknown 34.9
Subthalamic nucleus
nTPM: 38.5
2275 Male, age 66, unknown 44.6
2406 Female, age 72, unknown 44.3
2658 Male, age 74, both hemispheres 41.8
2282 Male, age 61, both hemispheres 38.5
2124 Male, age 62, unknown 37.1
2056 Female, age 72, unknown 35.9
2779 Female, age 42, unknown 35.4
2216 Male, age 48, unknown 30.7
Ventral posterolateral thalamic nucleus
nTPM: 56.7
2740 Male, age 76, right hemisphere 82.3
2397 Male, age 61, right hemisphere 64.7
2570 Male, age 75, right hemisphere 54.0
2197 Male, age 80, both hemispheres 52.6
2578 Male, age 74, both hemispheres 44.3
2581 Female, age 72, unknown 42.1
Ventral posteromedial thalamic nucleus
nTPM: 47.2
2281 Male, age 75, right hemisphere 53.5
2202 Male, age 61, left hemisphere 52.2
2758 Male, age 80, both hemispheres 50.1
2653 Male, age 74, both hemispheres 49.2
2127 Male, age 76, right hemisphere 31.0
Ventral thalamic nuclei
nTPM: 48.6
1845 Male, age 48, unknown 65.9
1860 Male, age 76, both hemispheres 65.6
2858 Female, age 72, unknown 48.8
2652 Male, age 74, left hemisphere 44.8
1912 Female, age 42, unknown 44.1
2285 Male, age 62, unknown 44.0
2580 Male, age 66, unknown 43.7
2204 Male, age 80, both hemispheres 43.5
2291 Female, age 72, unknown 37.0
Zona incerta
nTPM: 37.4
2215 Male, age 66, unknown 46.2
2822 Male, age 74, right hemisphere 35.9
2208 Male, age 80, right hemisphere 35.6
2663 Female, age 72, unknown 35.3
2403 Male, age 62, unknown 34.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 42.1
FF:10154-103A1 76 years, female 42.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.1
Pig sample Sample description nTPM
Thalamus
nTPM: 42.1
Samples: 4

Max nTPM: 51.7
Min nTPM: 21.6
Sample A Female 51.2
Sample B Female 43.8
Sample C Male 51.7
Sample D Male 21.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 31.9
Samples: 4

Max nTPM: 36.8
Min nTPM: 26.8
Sample A Male 26.8
Sample B Male 35.4
Sample C Female 28.5
Sample D Female 36.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 6.6
70787002 Antisense, RP_050706_03_D09, Mouse strain C57BL/6J (56 days, male) 6.6

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