We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SYPL1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SYPL1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:189.5 nTPM
HPA Brain:78.5 nTPM
GTEx:189.5 nTPM
FANTOM5:193.3 Scaled Tags Per Million
Pig:48.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 69.2
1981 Female, age 72, midline 98.6
2048 Male, age 55, midline 86.5
2816 Male, age 47, midline 69.8
2194 Female, age 79, both hemispheres 45.6
2565 Male, age 75, midline 45.5
Cervical spinal cord, dorsal horn
nTPM: 78.5
2296 Male, age 66, both hemispheres 152.7
2173 Female, age 72, unknown 118.4
2069 Male, age 47, both hemispheres 74.9
1877 Male, age 55, unknown 59.8
2721 Male, age 90, both hemispheres 32.8
2297 Male, age 75, both hemispheres 32.6
Cervical spinal cord, ventral horn
nTPM: 73.4
2098 Female, age 72, unknown 123.8
2480 Male, age 75, both hemispheres 74.2
2068 Male, age 55, unknown 66.0
2295 Male, age 66, both hemispheres 63.3
2809 Male, age 90, both hemispheres 63.1
2820 Female, age 79, both hemispheres 50.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 189.5
Samples: 204

Max nTPM: 475.5
Min nTPM: 45.4
Std nTPM: 75.8
Median nTPM: 183.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 475.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 398.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 370.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 364.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 362.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 347.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 342.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 336.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 328.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 320.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 316.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 315.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 311.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 300.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 298.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 294.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 293.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 292.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 290.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 289.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 286.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 284.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 283.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 282.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 280.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 280.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 279.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 278.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 275.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 268.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 265.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 265.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 264.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 264.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 260.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 259.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 258.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 257.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 257.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 257.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 256.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 254.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 250.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 250.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 249.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 249.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 248.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 248.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 246.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 245.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 242.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 241.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 241.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 240.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 238.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 236.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 235.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 232.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 232.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 230.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 228.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 227.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 223.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 221.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 220.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 220.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 218.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 217.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 217.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 215.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 213.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 212.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 211.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 210.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 209.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 207.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 206.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 206.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 206.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 206.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 206.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 202.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 202.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 200.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 199.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 199.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 198.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 195.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 195.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 193.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 193.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 193.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 192.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 191.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 190.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 189.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 188.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 186.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 185.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 185.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 184.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 183.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 183.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 183.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 183.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 183.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 181.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 179.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 179.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 178.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 178.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 178.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 178.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 174.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 171.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 170.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 170.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 168.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 168.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 167.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 167.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 166.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 166.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 166.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 166.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 162.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 161.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 160.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 159.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 158.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 158.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 158.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 158.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 156.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 155.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 155.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 155.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 153.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 152.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 150.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 150.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 150.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 147.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 147.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 141.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 140.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 140.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 140.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 139.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 139.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 139.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 139.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 137.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 136.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 135.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 134.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 134.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 134.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 131.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 127.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 126.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 125.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 123.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 120.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 117.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 116.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 115.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 113.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 111.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 111.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 110.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 109.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 107.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 105.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 105.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 102.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 101.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 100.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 98.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 98.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 95.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 95.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 94.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 90.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 88.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 84.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 81.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 81.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 80.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 80.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 79.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 78.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 77.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 76.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 74.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 74.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 69.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 68.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 65.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 60.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 55.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 54.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 51.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 45.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

193.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 193.3
FF:10181-103D1 60 years, female 199.4
FF:10159-103A6 76 years, female 187.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 40.9
Samples: 4

Max nTPM: 46.6
Min nTPM: 38.1
Sample A Female 38.7
Sample B Female 46.6
Sample C Male 38.1
Sample D Male 40.1
Ventral spinal cord
nTPM: 48.3
Samples: 4

Max nTPM: 64.0
Min nTPM: 39.1
Sample A Female 46.5
Sample B Female 43.4
Sample C Male 39.1
Sample D Male 64.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo