A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.8
nTPM
Monaco:
4.3
nTPM
Schmiedel:
14.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.8
HPA sample
nTPM
Classical monocyte nTPM: 3.1
Samples: 6
Max nTPM: 3.8
Min nTPM: 1.7
P10809_1003
1.7
P10809_1020
2.1
P10809_1039
3.8
P10809_1058
3.8
P10809_1080
3.6
P10809_1107
3.6
Intermediate monocyte nTPM: 3.8
Samples: 6
Max nTPM: 6.9
Min nTPM: 1.2
P10809_1004
1.2
P10809_1023
1.6
P10809_1042
6.3
P10809_1061
6.9
P10809_1081
3.4
P10809_1108
3.3
Non-classical monocyte nTPM: 1.8
Samples: 5
Max nTPM: 2.8
Min nTPM: 0.0
P10809_1005
2.2
P10809_1053
2.6
P10809_1072
0.0
P10809_1082
2.8
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.3
Monaco sample
nTPM
Classical monocyte nTPM: 4.3
Samples: 4
Max nTPM: 7.9
Min nTPM: 2.0
RHH5313_R3680
4.3
RHH5221_R3593
2.9
RHH5250_R3622
2.0
RHH5279_R3651
7.9
Intermediate monocyte nTPM: 3.9
Samples: 4
Max nTPM: 6.2
Min nTPM: 1.4
RHH5314_R3681
6.2
RHH5222_R3594
2.2
RHH5251_R3623
5.8
RHH5280_R3652
1.4
Non-classical monocyte nTPM: 3.7
Samples: 4
Max nTPM: 5.4
Min nTPM: 2.3
RHH5315_R3682
3.8
RHH5223_R3595
5.4
RHH5252_R3624
3.3
RHH5281_R3653
2.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.4
Schmiedel sample id
TPM
Classical monocyte TPM: 14.4
Samples: 91
Max TPM: 22.8
Min TPM: 4.8
MONOCYTES_1
22.8
MONOCYTES_2
22.8
MONOCYTES_3
22.5
MONOCYTES_4
22.3
MONOCYTES_5
21.1
MONOCYTES_6
21.0
MONOCYTES_7
20.8
MONOCYTES_8
20.6
MONOCYTES_9
20.4
MONOCYTES_10
20.2
MONOCYTES_11
20.2
MONOCYTES_12
20.2
MONOCYTES_13
20.0
MONOCYTES_14
19.9
MONOCYTES_15
19.5
MONOCYTES_16
19.2
MONOCYTES_17
19.0
MONOCYTES_18
18.9
MONOCYTES_19
18.8
MONOCYTES_20
18.6
MONOCYTES_21
18.3
MONOCYTES_22
18.1
MONOCYTES_23
18.1
MONOCYTES_24
17.9
MONOCYTES_25
17.9
MONOCYTES_26
17.9
MONOCYTES_27
17.6
MONOCYTES_28
17.0
MONOCYTES_29
16.7
MONOCYTES_30
16.7
MONOCYTES_31
16.6
MONOCYTES_32
16.5
MONOCYTES_33
16.5
MONOCYTES_34
16.5
MONOCYTES_35
16.4
MONOCYTES_36
16.4
MONOCYTES_37
16.2
MONOCYTES_38
16.0
MONOCYTES_39
15.9
MONOCYTES_40
15.6
MONOCYTES_41
15.5
MONOCYTES_42
15.3
MONOCYTES_43
15.2
MONOCYTES_44
15.1
MONOCYTES_45
15.0
MONOCYTES_46
14.5
MONOCYTES_47
14.3
MONOCYTES_48
13.6
MONOCYTES_49
13.5
MONOCYTES_50
13.4
MONOCYTES_51
13.0
MONOCYTES_52
12.9
MONOCYTES_53
12.9
MONOCYTES_54
12.7
MONOCYTES_55
12.5
MONOCYTES_56
12.2
MONOCYTES_57
11.8
MONOCYTES_58
11.7
MONOCYTES_59
11.7
MONOCYTES_60
11.5
MONOCYTES_61
11.4
MONOCYTES_62
11.4
MONOCYTES_63
11.1
MONOCYTES_64
11.1
MONOCYTES_65
11.0
MONOCYTES_66
11.0
MONOCYTES_67
11.0
MONOCYTES_68
10.8
MONOCYTES_69
10.7
MONOCYTES_70
10.7
MONOCYTES_71
10.6
MONOCYTES_72
10.6
MONOCYTES_73
10.5
MONOCYTES_74
10.5
MONOCYTES_75
10.4
MONOCYTES_76
10.3
MONOCYTES_77
10.2
MONOCYTES_78
9.9
MONOCYTES_79
9.6
MONOCYTES_80
9.4
MONOCYTES_81
9.2
MONOCYTES_82
8.3
MONOCYTES_83
8.2
MONOCYTES_84
7.9
MONOCYTES_85
7.8
MONOCYTES_86
7.3
MONOCYTES_87
7.1
MONOCYTES_88
6.8
MONOCYTES_89
6.2
MONOCYTES_90
5.8
MONOCYTES_91
4.8
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Non-classical monocyte TPM: 13.7
Samples: 90
Max TPM: 29.5
Min TPM: 2.6
M2_1
29.5
M2_2
26.2
M2_3
23.3
M2_4
23.3
M2_5
22.2
M2_6
21.9
M2_7
21.8
M2_8
21.5
M2_9
21.1
M2_10
21.1
M2_11
21.0
M2_12
21.0
M2_13
20.9
M2_14
20.9
M2_15
19.8
M2_16
19.7
M2_17
19.5
M2_18
19.0
M2_19
18.9
M2_20
18.4
M2_21
18.2
M2_22
17.4
M2_23
17.3
M2_24
17.3
M2_25
17.1
M2_26
17.1
M2_27
16.9
M2_28
16.6
M2_29
16.5
M2_30
16.5
M2_31
16.4
M2_32
16.4
M2_33
16.3
M2_34
16.1
M2_35
16.1
M2_36
16.0
M2_37
15.9
M2_38
15.9
M2_39
15.9
M2_40
15.5
M2_41
15.5
M2_42
15.2
M2_43
14.8
M2_44
14.6
M2_45
14.2
M2_46
14.0
M2_47
13.8
M2_48
13.7
M2_49
13.2
M2_50
13.0
M2_51
13.0
M2_52
13.0
M2_53
12.8
M2_54
12.6
M2_55
12.3
M2_56
11.9
M2_57
11.9
M2_58
11.7
M2_59
11.6
M2_60
11.6
M2_61
11.2
M2_62
10.8
M2_63
10.5
M2_64
10.2
M2_65
10.0
M2_66
9.7
M2_67
8.7
M2_68
8.3
M2_69
8.3
M2_70
8.2
M2_71
8.1
M2_72
7.7
M2_73
7.3
M2_74
7.3
M2_75
6.7
M2_76
6.3
M2_77
6.3
M2_78
6.1
M2_79
5.9
M2_80
5.6
M2_81
5.5
M2_82
5.0
M2_83
4.6
M2_84
4.4
M2_85
4.3
M2_86
3.9
M2_87
3.4
M2_88
3.0
M2_89
2.8
M2_90
2.6
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