A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.5
nTPM
Monaco:
144.2
nTPM
Schmiedel:
85.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.5
HPA sample
nTPM
Classical monocyte nTPM: 8.8
Samples: 6
Max nTPM: 13.9
Min nTPM: 6.3
P10809_1003
13.9
P10809_1020
9.1
P10809_1039
6.6
P10809_1058
6.3
P10809_1080
9.2
P10809_1107
7.8
Intermediate monocyte nTPM: 8.1
Samples: 6
Max nTPM: 11.6
Min nTPM: 5.6
P10809_1004
8.1
P10809_1023
7.2
P10809_1042
11.6
P10809_1061
8.7
P10809_1081
7.4
P10809_1108
5.6
Non-classical monocyte nTPM: 20.5
Samples: 5
Max nTPM: 41.1
Min nTPM: 12.6
P10809_1005
17.1
P10809_1053
17.8
P10809_1072
41.1
P10809_1082
12.6
P10809_1109
14.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
144.2
Monaco sample
nTPM
Classical monocyte nTPM: 80.9
Samples: 4
Max nTPM: 92.8
Min nTPM: 73.6
RHH5313_R3680
73.6
RHH5221_R3593
73.6
RHH5250_R3622
92.8
RHH5279_R3651
83.4
Intermediate monocyte nTPM: 111.2
Samples: 4
Max nTPM: 144.1
Min nTPM: 66.3
RHH5314_R3681
66.3
RHH5222_R3594
108.2
RHH5251_R3623
144.1
RHH5280_R3652
126.2
Non-classical monocyte nTPM: 144.2
Samples: 4
Max nTPM: 185.8
Min nTPM: 107.2
RHH5315_R3682
134.3
RHH5223_R3595
107.2
RHH5252_R3624
185.8
RHH5281_R3653
149.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.6
Schmiedel sample id
TPM
Classical monocyte TPM: 51.8
Samples: 91
Max TPM: 66.9
Min TPM: 36.8
MONOCYTES_1
66.9
MONOCYTES_2
66.8
MONOCYTES_3
65.1
MONOCYTES_4
64.7
MONOCYTES_5
64.3
MONOCYTES_6
63.3
MONOCYTES_7
62.6
MONOCYTES_8
62.5
MONOCYTES_9
61.8
MONOCYTES_10
61.8
MONOCYTES_11
61.7
MONOCYTES_12
61.1
MONOCYTES_13
60.6
MONOCYTES_14
60.2
MONOCYTES_15
59.8
MONOCYTES_16
58.4
MONOCYTES_17
58.4
MONOCYTES_18
58.0
MONOCYTES_19
57.7
MONOCYTES_20
57.4
MONOCYTES_21
57.1
MONOCYTES_22
57.1
MONOCYTES_23
56.7
MONOCYTES_24
56.1
MONOCYTES_25
56.1
MONOCYTES_26
55.6
MONOCYTES_27
55.1
MONOCYTES_28
55.0
MONOCYTES_29
54.8
MONOCYTES_30
54.2
MONOCYTES_31
54.0
MONOCYTES_32
53.9
MONOCYTES_33
53.8
MONOCYTES_34
53.5
MONOCYTES_35
53.4
MONOCYTES_36
53.2
MONOCYTES_37
53.1
MONOCYTES_38
53.1
MONOCYTES_39
52.7
MONOCYTES_40
52.7
MONOCYTES_41
52.6
MONOCYTES_42
52.4
MONOCYTES_43
52.4
MONOCYTES_44
51.8
MONOCYTES_45
51.6
MONOCYTES_46
51.5
MONOCYTES_47
50.9
MONOCYTES_48
50.7
MONOCYTES_49
50.3
MONOCYTES_50
50.3
MONOCYTES_51
50.2
MONOCYTES_52
50.1
MONOCYTES_53
49.8
MONOCYTES_54
49.8
MONOCYTES_55
48.8
MONOCYTES_56
48.8
MONOCYTES_57
48.6
MONOCYTES_58
48.5
MONOCYTES_59
48.5
MONOCYTES_60
47.9
MONOCYTES_61
47.9
MONOCYTES_62
47.9
MONOCYTES_63
47.8
MONOCYTES_64
47.8
MONOCYTES_65
47.7
MONOCYTES_66
47.3
MONOCYTES_67
46.8
MONOCYTES_68
46.5
MONOCYTES_69
46.4
MONOCYTES_70
46.4
MONOCYTES_71
46.0
MONOCYTES_72
46.0
MONOCYTES_73
46.0
MONOCYTES_74
45.9
MONOCYTES_75
45.7
MONOCYTES_76
45.4
MONOCYTES_77
45.0
MONOCYTES_78
45.0
MONOCYTES_79
44.6
MONOCYTES_80
44.4
MONOCYTES_81
44.0
MONOCYTES_82
42.8
MONOCYTES_83
42.2
MONOCYTES_84
42.0
MONOCYTES_85
41.8
MONOCYTES_86
41.7
MONOCYTES_87
41.3
MONOCYTES_88
40.9
MONOCYTES_89
40.1
MONOCYTES_90
39.6
MONOCYTES_91
36.8
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Non-classical monocyte TPM: 85.6
Samples: 90
Max TPM: 134.4
Min TPM: 50.4
M2_1
134.4
M2_2
123.8
M2_3
120.8
M2_4
117.0
M2_5
113.9
M2_6
113.2
M2_7
105.5
M2_8
105.3
M2_9
104.6
M2_10
104.6
M2_11
103.4
M2_12
102.2
M2_13
102.1
M2_14
101.6
M2_15
101.3
M2_16
101.0
M2_17
100.7
M2_18
100.7
M2_19
98.6
M2_20
98.6
M2_21
97.9
M2_22
97.6
M2_23
97.4
M2_24
96.3
M2_25
95.4
M2_26
94.0
M2_27
93.9
M2_28
93.2
M2_29
92.2
M2_30
92.1
M2_31
91.9
M2_32
91.7
M2_33
91.5
M2_34
90.7
M2_35
89.7
M2_36
89.1
M2_37
89.0
M2_38
88.2
M2_39
88.0
M2_40
87.8
M2_41
87.3
M2_42
87.1
M2_43
87.1
M2_44
86.7
M2_45
86.6
M2_46
86.0
M2_47
85.7
M2_48
85.3
M2_49
85.3
M2_50
84.5
M2_51
83.5
M2_52
82.6
M2_53
82.1
M2_54
80.2
M2_55
79.5
M2_56
79.0
M2_57
78.8
M2_58
78.7
M2_59
78.7
M2_60
78.4
M2_61
78.3
M2_62
77.8
M2_63
77.7
M2_64
77.5
M2_65
77.4
M2_66
77.3
M2_67
75.3
M2_68
75.1
M2_69
74.4
M2_70
74.3
M2_71
73.8
M2_72
70.1
M2_73
69.9
M2_74
68.4
M2_75
67.4
M2_76
67.3
M2_77
65.7
M2_78
65.3
M2_79
64.1
M2_80
63.8
M2_81
63.4
M2_82
63.4
M2_83
62.6
M2_84
62.6
M2_85
61.9
M2_86
61.6
M2_87
60.7
M2_88
56.7
M2_89
51.7
M2_90
50.4
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