A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.2
nTPM
Monaco:
0.5
nTPM
Schmiedel:
12.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
HPA sample
nTPM
Classical monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.0
P10809_1039
0.1
P10809_1058
0.2
P10809_1080
0.4
P10809_1107
0.3
Intermediate monocyte nTPM: 0.0
Samples: 6
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1004
0.0
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.0
P10809_1108
0.1
Non-classical monocyte nTPM: 0.0
Samples: 5
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
Monaco sample
nTPM
Classical monocyte nTPM: 0.5
Samples: 4
Max nTPM: 0.7
Min nTPM: 0.4
RHH5313_R3680
0.4
RHH5221_R3593
0.6
RHH5250_R3622
0.7
RHH5279_R3651
0.4
Intermediate monocyte nTPM: 0.2
Samples: 4
Max nTPM: 0.4
Min nTPM: 0.0
RHH5314_R3681
0.3
RHH5222_R3594
0.4
RHH5251_R3623
0.2
RHH5280_R3652
0.0
Non-classical monocyte nTPM: 0.1
Samples: 4
Max nTPM: 0.2
Min nTPM: 0.0
RHH5315_R3682
0.0
RHH5223_R3595
0.1
RHH5252_R3624
0.2
RHH5281_R3653
0.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.9
Schmiedel sample id
TPM
Classical monocyte TPM: 12.9
Samples: 91
Max TPM: 35.5
Min TPM: 5.2
MONOCYTES_1
35.5
MONOCYTES_2
23.8
MONOCYTES_3
23.3
MONOCYTES_4
22.9
MONOCYTES_5
22.8
MONOCYTES_6
21.4
MONOCYTES_7
20.7
MONOCYTES_8
20.6
MONOCYTES_9
18.8
MONOCYTES_10
17.8
MONOCYTES_11
17.6
MONOCYTES_12
17.6
MONOCYTES_13
17.1
MONOCYTES_14
17.0
MONOCYTES_15
16.0
MONOCYTES_16
15.7
MONOCYTES_17
15.6
MONOCYTES_18
15.4
MONOCYTES_19
15.3
MONOCYTES_20
15.3
MONOCYTES_21
15.2
MONOCYTES_22
15.2
MONOCYTES_23
15.2
MONOCYTES_24
14.9
MONOCYTES_25
14.9
MONOCYTES_26
14.7
MONOCYTES_27
14.7
MONOCYTES_28
14.5
MONOCYTES_29
14.4
MONOCYTES_30
14.3
MONOCYTES_31
14.2
MONOCYTES_32
14.1
MONOCYTES_33
13.9
MONOCYTES_34
13.7
MONOCYTES_35
13.6
MONOCYTES_36
13.5
MONOCYTES_37
13.3
MONOCYTES_38
13.3
MONOCYTES_39
13.2
MONOCYTES_40
13.0
MONOCYTES_41
12.9
MONOCYTES_42
12.7
MONOCYTES_43
12.7
MONOCYTES_44
12.7
MONOCYTES_45
12.7
MONOCYTES_46
12.6
MONOCYTES_47
12.4
MONOCYTES_48
12.4
MONOCYTES_49
12.3
MONOCYTES_50
12.2
MONOCYTES_51
11.8
MONOCYTES_52
11.6
MONOCYTES_53
11.5
MONOCYTES_54
11.5
MONOCYTES_55
11.4
MONOCYTES_56
11.3
MONOCYTES_57
10.9
MONOCYTES_58
10.9
MONOCYTES_59
10.7
MONOCYTES_60
10.7
MONOCYTES_61
10.5
MONOCYTES_62
10.5
MONOCYTES_63
10.3
MONOCYTES_64
9.8
MONOCYTES_65
9.8
MONOCYTES_66
9.6
MONOCYTES_67
9.6
MONOCYTES_68
9.6
MONOCYTES_69
9.4
MONOCYTES_70
9.2
MONOCYTES_71
9.1
MONOCYTES_72
9.1
MONOCYTES_73
9.1
MONOCYTES_74
9.0
MONOCYTES_75
8.8
MONOCYTES_76
8.6
MONOCYTES_77
8.5
MONOCYTES_78
8.5
MONOCYTES_79
8.2
MONOCYTES_80
8.2
MONOCYTES_81
8.2
MONOCYTES_82
7.9
MONOCYTES_83
7.4
MONOCYTES_84
7.0
MONOCYTES_85
6.7
MONOCYTES_86
6.6
MONOCYTES_87
6.4
MONOCYTES_88
6.3
MONOCYTES_89
5.7
MONOCYTES_90
5.6
MONOCYTES_91
5.2
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Non-classical monocyte TPM: 0.3
Samples: 90
Max TPM: 4.9
Min TPM: 0.0
M2_1
4.9
M2_2
2.1
M2_3
1.7
M2_4
1.3
M2_5
1.1
M2_6
0.8
M2_7
0.8
M2_8
0.7
M2_9
0.6
M2_10
0.6
M2_11
0.5
M2_12
0.5
M2_13
0.5
M2_14
0.5
M2_15
0.4
M2_16
0.4
M2_17
0.4
M2_18
0.4
M2_19
0.4
M2_20
0.3
M2_21
0.3
M2_22
0.3
M2_23
0.3
M2_24
0.3
M2_25
0.3
M2_26
0.3
M2_27
0.3
M2_28
0.3
M2_29
0.3
M2_30
0.3
M2_31
0.3
M2_32
0.3
M2_33
0.2
M2_34
0.2
M2_35
0.2
M2_36
0.2
M2_37
0.2
M2_38
0.2
M2_39
0.2
M2_40
0.2
M2_41
0.2
M2_42
0.2
M2_43
0.2
M2_44
0.1
M2_45
0.1
M2_46
0.1
M2_47
0.1
M2_48
0.1
M2_49
0.1
M2_50
0.1
M2_51
0.1
M2_52
0.1
M2_53
0.1
M2_54
0.1
M2_55
0.1
M2_56
0.1
M2_57
0.1
M2_58
0.1
M2_59
0.1
M2_60
0.1
M2_61
0.1
M2_62
0.1
M2_63
0.0
M2_64
0.0
M2_65
0.0
M2_66
0.0
M2_67
0.0
M2_68
0.0
M2_69
0.0
M2_70
0.0
M2_71
0.0
M2_72
0.0
M2_73
0.0
M2_74
0.0
M2_75
0.0
M2_76
0.0
M2_77
0.0
M2_78
0.0
M2_79
0.0
M2_80
0.0
M2_81
0.0
M2_82
0.0
M2_83
0.0
M2_84
0.0
M2_85
0.0
M2_86
0.0
M2_87
0.0
M2_88
0.0
M2_89
0.0
M2_90
0.0
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The Human Protein Atlas project is funded
