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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:107.6 nTPM
HPA Brain:136.8 nTPM
GTEx:107.6 nTPM
FANTOM5:215.3 Scaled Tags Per Million
Pig:117.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 117.5
2194 Female, age 79, both hemispheres 125.8
2048 Male, age 55, midline 124.9
1981 Female, age 72, midline 123.9
2816 Male, age 47, midline 106.7
2565 Male, age 75, midline 106.3
Cervical spinal cord, dorsal horn
nTPM: 111.6
2173 Female, age 72, unknown 141.7
2296 Male, age 66, both hemispheres 129.4
2069 Male, age 47, both hemispheres 112.3
1877 Male, age 55, unknown 105.0
2721 Male, age 90, both hemispheres 94.7
2297 Male, age 75, both hemispheres 86.4
Cervical spinal cord, ventral horn
nTPM: 136.8
2480 Male, age 75, both hemispheres 154.8
2809 Male, age 90, both hemispheres 144.6
2295 Male, age 66, both hemispheres 143.7
2068 Male, age 55, unknown 137.4
2098 Female, age 72, unknown 120.8
2820 Female, age 79, both hemispheres 119.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 107.6
Samples: 204

Max nTPM: 244.2
Min nTPM: 47.5
Std nTPM: 26.8
Median nTPM: 105.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 244.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 243.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 199.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 165.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 160.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 159.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 156.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 156.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 148.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 148.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 148.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 148.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 144.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 144.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 142.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 142.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 142.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 140.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 139.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 139.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 137.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 136.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 134.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 132.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 131.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 131.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 130.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 129.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 129.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 129.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 129.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 129.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 129.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 127.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 127.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 126.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 126.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 126.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 125.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 125.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 125.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 124.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 124.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 123.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 123.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 123.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 123.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 123.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 122.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 121.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 121.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 121.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 118.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 118.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 118.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 118.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 118.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 117.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 117.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 116.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 116.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 116.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 116.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 116.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 116.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 116.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 116.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 115.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 115.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 115.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 114.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 114.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 114.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 114.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 114.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 114.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 113.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 113.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 112.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 112.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 112.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 112.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 111.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 111.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 111.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 110.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 110.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 110.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 110.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 110.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 109.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 109.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 108.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 108.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 107.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 106.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 106.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 106.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 106.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 105.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 105.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 105.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 105.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 105.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 105.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 104.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 104.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 104.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 103.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 103.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 103.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 103.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 103.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 103.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 103.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 103.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 103.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 103.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 102.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 102.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 102.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 102.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 101.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 101.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 100.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 100.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 99.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 98.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 98.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 98.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 98.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 98.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 98.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 97.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 97.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 97.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 97.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 96.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 95.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 95.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 95.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 95.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 94.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 94.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 94.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 93.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 93.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 93.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 92.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 92.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 92.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 92.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 92.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 92.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 91.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 91.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 91.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 90.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 89.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 88.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 88.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 88.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 88.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 87.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 86.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 84.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 84.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 84.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 83.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 83.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 83.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 82.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 82.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 81.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 80.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 79.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 79.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 78.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 78.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 78.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 76.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 76.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 75.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 75.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 75.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 72.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 71.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 71.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 71.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 70.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 70.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 70.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 68.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 67.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 66.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 65.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 65.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 62.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 62.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 61.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 48.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 47.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 215.3
FF:10159-103A6 76 years, female 231.0
FF:10181-103D1 60 years, female 199.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 117.6
Samples: 4

Max nTPM: 144.7
Min nTPM: 99.4
Sample A Female 119.9
Sample B Female 144.7
Sample C Male 99.4
Sample D Male 106.3
Ventral spinal cord
nTPM: 116.5
Samples: 4

Max nTPM: 143.5
Min nTPM: 87.9
Sample A Female 131.1
Sample B Female 103.6
Sample C Male 87.9
Sample D Male 143.5

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