MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.6 nTPM
HPA Brain:141.1 nTPM
GTEx:100.6 nTPM
FANTOM5:161.8 Scaled Tags Per Million
Pig:111.4 nTPM
Mouse:121.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 141.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.0
2666 Male, age 74, left hemisphere 130.7
1870 Female, age 42, unknown 124.6
1833 Male, age 53, unknown 122.6
2219 Male, age 76, both hemispheres 119.6
1827 Male, age 72, unknown 116.5
2411 Female, age 72, unknown 113.7
1830 Male, age 51, unknown 110.3
2019 Male, age 18, unknown 108.0
2828 Female, age 72, unknown 102.4
2586 Male, age 75, left hemisphere 81.2
Dorsal raphe nucleus
nTPM: 111.4
1828 Male, age 53, unknown 117.6
2750 Male, age 76, both hemispheres 116.6
2016 Female, age 72, unknown 113.8
2047 Male, age 72, unknown 105.3
2298 Female, age 72, unknown 103.8
Inferior colliculus
nTPM: 109.6
2849 Male, age 72, unknown 137.0
1848 Female, age 42, unknown 106.3
1890 Male, age 53, unknown 101.7
2097 Female, age 72, unknown 93.5
Median raphe nucleus
nTPM: 141.1
2220 Male, age 76, midline 141.1
Periaquaductal grey, anterior
nTPM: 104.7
1947 Male, age 18, unknown 111.7
2502 Female, age 75, unknown 104.8
1795 Male, age 51, unknown 97.6
Periaquaductal grey, dorsal
nTPM: 118.3
2850 Male, age 76, both hemispheres 131.2
1840 Male, age 53, unknown 117.9
1831 Male, age 72, unknown 112.1
2464 Female, age 72, unknown 112.1
Periaquaductal grey, lateral
nTPM: 101.0
2140 Male, age 76, both hemispheres 112.1
2053 Male, age 18, unknown 102.3
2272 Male, age 74, both hemispheres 88.8
Pretectal area
nTPM: 112.1
1817 Female, age 42, unknown 125.6
1815 Male, age 53, unknown 119.1
2224 Female, age 72, unknown 118.0
1816 Male, age 51, unknown 116.2
1944 Female, age 72, unknown 115.6
2667 Female, age 75, unknown 113.3
2825 Male, age 18, unknown 111.7
2007 Male, age 72, unknown 111.3
2407 Male, age 75, both hemispheres 103.0
2273 Male, age 74, both hemispheres 100.5
2316 Male, age 76, right hemisphere 99.0
Red nucleus
nTPM: 119.4
2725 Female, age 75, unknown 153.9
2503 Female, age 72, unknown 150.3
1821 Female, age 72, unknown 137.0
1865 Male, age 51, unknown 119.7
2588 Male, age 74, left hemisphere 119.4
1954 Female, age 42, unknown 115.7
2823 Male, age 76, right hemisphere 115.5
2227 Male, age 72, unknown 114.7
1904 Male, age 53, unknown 108.4
2769 Male, age 72, unknown 106.5
2785 Male, age 18, unknown 96.2
2584 Male, age 75, left hemisphere 95.8
Substantia nigra
nTPM: 124.6
2699 Male, age 18, unknown 162.7
1916 Female, age 42, unknown 148.0
1851 Male, age 51, unknown 130.8
1941 Male, age 53, unknown 129.0
2665 Male, age 74, both hemispheres 121.9
2409 Female, age 72, unknown 121.3
1889 Female, age 72, unknown 120.1
2241 Male, age 72, unknown 117.5
2590 Female, age 75, unknown 97.8
2583 Male, age 75, right hemisphere 97.1
Superior colliculus
nTPM: 104.9
2587 Male, age 74, left hemisphere 121.2
1913 Female, age 42, unknown 115.0
1839 Male, age 51, unknown 113.8
1895 Male, age 76, right hemisphere 111.0
1995 Male, age 72, unknown 106.7
1796 Male, age 53, unknown 100.3
2668 Female, age 75, unknown 99.5
2087 Female, age 72, unknown 98.2
2261 Male, age 18, unknown 92.9
2664 Male, age 75, both hemispheres 90.6
Ventral tegmental area
nTPM: 122.0
2218 Male, age 76, both hemispheres 136.7
2223 Female, age 72, unknown 128.0
1915 Female, age 42, unknown 126.9
2410 Female, age 72, unknown 117.1
2021 Male, age 53, unknown 114.4
1942 Male, age 51, unknown 108.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 100.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.6
Samples: 183

Max nTPM: 203.7
Min nTPM: 44.7
Std nTPM: 25.6
Median nTPM: 98.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 203.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 196.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 160.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 155.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 152.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 151.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 150.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 146.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 146.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 142.9
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 141.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 161.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 161.8
FF:10158-103A5 76 years, female 161.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 111.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 105.1
Samples: 4

Max nTPM: 120.5
Min nTPM: 90.7
Sample A Female 120.5
Sample B Female 90.7
Sample C Male 114.7
Sample D Male 94.4
Midbrain
nTPM: 111.4
Samples: 4

Max nTPM: 174.0
Min nTPM: 81.2
Sample A Female 174.0
Sample B Female 91.2
Sample C Male 99.2
Sample D Male 81.2
Periaqueductal gray
nTPM: 90.8
Samples: 3

Max nTPM: 101.2
Min nTPM: 78.1
Sample B Female 78.1
Sample C Male 101.2
Sample D Male 93.0
Superior colliculi
nTPM: 99.9
Samples: 4

Max nTPM: 109.3
Min nTPM: 76.4
Sample A Female 106.7
Sample B Female 76.4
Sample C Male 107.2
Sample D Male 109.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 121.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.0
Samples: 4

Max nTPM: 128.9
Min nTPM: 111.9
Sample A Male 111.9
Sample B Male 121.9
Sample C Female 128.9
Sample D Female 121.3

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