A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.0
nTPM
Monaco:
2.3
nTPM
Schmiedel:
16.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
HPA sample
nTPM
NK-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1013
0.1
P10809_1033
0.2
P10809_1052
0.0
P10809_1071
0.1
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.3
Monaco sample
nTPM
NK-cell nTPM: 2.3
Samples: 4
Max nTPM: 3.2
Min nTPM: 1.7
RHH5316_R3683
1.7
RHH5224_R3596
2.2
RHH5253_R3625
2.0
RHH5282_R3654
3.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.8
Schmiedel sample id
TPM
NK-cell TPM: 16.8
Samples: 90
Max TPM: 30.2
Min TPM: 5.9
NK_1
30.2
NK_2
27.0
NK_3
26.4
NK_4
25.4
NK_5
24.2
NK_6
23.6
NK_7
23.2
NK_8
23.1
NK_9
22.9
NK_10
22.6
NK_11
22.1
NK_12
21.6
NK_13
21.0
NK_14
21.0
NK_15
20.8
NK_16
20.7
NK_17
20.7
NK_18
20.6
NK_19
20.3
NK_20
20.3
NK_21
19.6
NK_22
19.5
NK_23
19.3
NK_24
19.2
NK_25
19.1
NK_26
19.0
NK_27
18.9
NK_28
18.7
NK_29
18.6
NK_30
18.6
NK_31
18.2
NK_32
18.0
NK_33
17.8
NK_34
17.8
NK_35
17.8
NK_36
17.6
NK_37
17.1
NK_38
17.0
NK_39
17.0
NK_40
16.8
NK_41
16.7
NK_42
16.7
NK_43
16.7
NK_44
16.7
NK_45
16.5
NK_46
16.5
NK_47
16.4
NK_48
16.4
NK_49
16.3
NK_50
16.2
NK_51
16.2
NK_52
15.9
NK_53
15.7
NK_54
15.2
NK_55
15.1
NK_56
14.9
NK_57
14.8
NK_58
14.7
NK_59
14.6
NK_60
14.4
NK_61
14.3
NK_62
14.1
NK_63
14.1
NK_64
14.0
NK_65
13.9
NK_66
13.9
NK_67
13.8
NK_68
13.8
NK_69
13.7
NK_70
13.6
NK_71
13.5
NK_72
13.5
NK_73
13.5
NK_74
13.4
NK_75
13.2
NK_76
13.2
NK_77
13.0
NK_78
12.3
NK_79
12.2
NK_80
12.1
NK_81
11.9
NK_82
11.9
NK_83
11.6
NK_84
11.5
NK_85
10.6
NK_86
10.5
NK_87
10.3
NK_88
9.6
NK_89
6.2
NK_90
5.9
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