A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.1
nTPM
Monaco:
54.5
nTPM
Schmiedel:
26.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.1
HPA sample
nTPM
Classical monocyte nTPM: 8.8
Samples: 6
Max nTPM: 12.4
Min nTPM: 4.5
P10809_1003
4.5
P10809_1020
6.3
P10809_1039
8.2
P10809_1058
10.3
P10809_1080
12.4
P10809_1107
11.0
Intermediate monocyte nTPM: 9.4
Samples: 6
Max nTPM: 10.9
Min nTPM: 8.7
P10809_1004
9.3
P10809_1023
9.6
P10809_1042
8.7
P10809_1061
8.9
P10809_1081
10.9
P10809_1108
9.0
Non-classical monocyte nTPM: 10.1
Samples: 5
Max nTPM: 12.3
Min nTPM: 6.6
P10809_1005
6.6
P10809_1053
9.2
P10809_1072
11.8
P10809_1082
12.3
P10809_1109
10.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.5
Monaco sample
nTPM
Classical monocyte nTPM: 45.3
Samples: 4
Max nTPM: 53.5
Min nTPM: 37.6
RHH5313_R3680
37.6
RHH5221_R3593
38.5
RHH5250_R3622
53.5
RHH5279_R3651
51.7
Intermediate monocyte nTPM: 43.1
Samples: 4
Max nTPM: 53.0
Min nTPM: 35.8
RHH5314_R3681
39.9
RHH5222_R3594
53.0
RHH5251_R3623
35.8
RHH5280_R3652
43.7
Non-classical monocyte nTPM: 54.5
Samples: 4
Max nTPM: 78.4
Min nTPM: 39.3
RHH5315_R3682
45.1
RHH5223_R3595
78.4
RHH5252_R3624
39.3
RHH5281_R3653
55.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.2
Schmiedel sample id
TPM
Classical monocyte TPM: 16.3
Samples: 91
Max TPM: 21.8
Min TPM: 11.3
MONOCYTES_1
21.8
MONOCYTES_2
21.0
MONOCYTES_3
20.8
MONOCYTES_4
20.4
MONOCYTES_5
20.3
MONOCYTES_6
19.6
MONOCYTES_7
19.5
MONOCYTES_8
19.5
MONOCYTES_9
19.4
MONOCYTES_10
19.3
MONOCYTES_11
19.3
MONOCYTES_12
19.3
MONOCYTES_13
19.2
MONOCYTES_14
19.2
MONOCYTES_15
18.7
MONOCYTES_16
18.5
MONOCYTES_17
18.5
MONOCYTES_18
18.3
MONOCYTES_19
18.2
MONOCYTES_20
18.1
MONOCYTES_21
18.1
MONOCYTES_22
17.9
MONOCYTES_23
17.9
MONOCYTES_24
17.8
MONOCYTES_25
17.8
MONOCYTES_26
17.7
MONOCYTES_27
17.7
MONOCYTES_28
17.6
MONOCYTES_29
17.4
MONOCYTES_30
17.4
MONOCYTES_31
17.3
MONOCYTES_32
16.9
MONOCYTES_33
16.9
MONOCYTES_34
16.7
MONOCYTES_35
16.6
MONOCYTES_36
16.5
MONOCYTES_37
16.5
MONOCYTES_38
16.5
MONOCYTES_39
16.4
MONOCYTES_40
16.4
MONOCYTES_41
16.4
MONOCYTES_42
16.2
MONOCYTES_43
16.2
MONOCYTES_44
16.2
MONOCYTES_45
16.2
MONOCYTES_46
16.1
MONOCYTES_47
16.1
MONOCYTES_48
16.1
MONOCYTES_49
16.0
MONOCYTES_50
16.0
MONOCYTES_51
15.8
MONOCYTES_52
15.8
MONOCYTES_53
15.8
MONOCYTES_54
15.6
MONOCYTES_55
15.6
MONOCYTES_56
15.6
MONOCYTES_57
15.6
MONOCYTES_58
15.5
MONOCYTES_59
15.5
MONOCYTES_60
15.5
MONOCYTES_61
15.4
MONOCYTES_62
15.3
MONOCYTES_63
15.2
MONOCYTES_64
15.0
MONOCYTES_65
15.0
MONOCYTES_66
15.0
MONOCYTES_67
14.9
MONOCYTES_68
14.9
MONOCYTES_69
14.8
MONOCYTES_70
14.7
MONOCYTES_71
14.6
MONOCYTES_72
14.5
MONOCYTES_73
14.3
MONOCYTES_74
14.2
MONOCYTES_75
14.2
MONOCYTES_76
14.0
MONOCYTES_77
13.8
MONOCYTES_78
13.8
MONOCYTES_79
13.8
MONOCYTES_80
13.7
MONOCYTES_81
13.5
MONOCYTES_82
13.4
MONOCYTES_83
13.3
MONOCYTES_84
13.3
MONOCYTES_85
13.1
MONOCYTES_86
13.1
MONOCYTES_87
12.9
MONOCYTES_88
12.7
MONOCYTES_89
12.7
MONOCYTES_90
12.4
MONOCYTES_91
11.3
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Non-classical monocyte TPM: 26.2
Samples: 90
Max TPM: 40.3
Min TPM: 19.3
M2_1
40.3
M2_2
37.3
M2_3
33.7
M2_4
33.1
M2_5
32.5
M2_6
32.3
M2_7
32.0
M2_8
31.9
M2_9
31.4
M2_10
30.9
M2_11
30.8
M2_12
30.8
M2_13
30.0
M2_14
30.0
M2_15
29.9
M2_16
29.8
M2_17
29.8
M2_18
29.7
M2_19
29.6
M2_20
29.4
M2_21
29.4
M2_22
29.4
M2_23
29.1
M2_24
29.1
M2_25
29.0
M2_26
28.9
M2_27
28.5
M2_28
28.4
M2_29
28.3
M2_30
28.3
M2_31
28.3
M2_32
28.2
M2_33
28.2
M2_34
28.1
M2_35
28.0
M2_36
27.3
M2_37
27.2
M2_38
26.9
M2_39
26.7
M2_40
26.7
M2_41
26.6
M2_42
26.5
M2_43
26.3
M2_44
25.9
M2_45
25.9
M2_46
25.8
M2_47
25.3
M2_48
25.1
M2_49
25.1
M2_50
25.1
M2_51
25.0
M2_52
25.0
M2_53
25.0
M2_54
24.9
M2_55
24.8
M2_56
24.8
M2_57
24.7
M2_58
24.5
M2_59
24.5
M2_60
24.5
M2_61
24.1
M2_62
24.0
M2_63
23.8
M2_64
23.5
M2_65
23.1
M2_66
22.6
M2_67
22.6
M2_68
22.6
M2_69
22.6
M2_70
22.6
M2_71
22.5
M2_72
22.4
M2_73
22.1
M2_74
22.1
M2_75
21.8
M2_76
21.8
M2_77
21.6
M2_78
21.5
M2_79
21.3
M2_80
20.9
M2_81
20.9
M2_82
20.9
M2_83
20.7
M2_84
20.4
M2_85
20.2
M2_86
20.2
M2_87
19.8
M2_88
19.4
M2_89
19.3
M2_90
19.3
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